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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G095700.1.p | ||||||||
Common Name | GLYMA_09G095700, LOC100803034 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TALE | ||||||||
Protein Properties | Length: 370aa MW: 41611.3 Da PI: 5.5969 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 22.8 | 1.6e-07 | 307 | 339 | 22 | 54 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 +yp++e++++L +++gL+ +q+ +WF N+R + Glyma.09G095700.1.p 307 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 339 59*****************************87 PP | |||||||
2 | ELK | 29.5 | 1.7e-10 | 260 | 281 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+ +++++++E++ Glyma.09G095700.1.p 260 ELKHELKQGYKDKIVDIREEIL 281 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 2.7E-18 | 94 | 138 | IPR005540 | KNOX1 |
Pfam | PF03790 | 2.4E-17 | 96 | 137 | IPR005540 | KNOX1 |
SMART | SM01256 | 6.6E-27 | 148 | 203 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.5E-19 | 152 | 202 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 9.969 | 260 | 280 | IPR005539 | ELK domain |
SMART | SM01188 | 5.1E-4 | 260 | 281 | IPR005539 | ELK domain |
Pfam | PF03789 | 1.2E-5 | 260 | 281 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.612 | 280 | 343 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-10 | 282 | 347 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-16 | 282 | 346 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.36E-11 | 283 | 344 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.2E-25 | 287 | 344 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 9.8E-18 | 300 | 339 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MAFHEHLPHE ITFQPFAEEQ QQQQLGQSRD MQRLLPLSGG APTWLNNSNA ATLRQQNFLH 60 LQPESAATAA QQNDDVRAMD RNRTESNSEA DDLAEYKADI LGHPLYDQLL SAHVSCLRIA 120 TPVDQLPRID AQLQQSQRVV DKYSGLGNGN GVVDDKELDQ FMTHYVILLC AFKEQLQQHV 180 RVHAMEAVMA CWELEQSLQS LTGVSPGEGT GATMSDNEED QAESNANLYE GGMDGADSLS 240 FGPLVPTETE RSLMERVRQE LKHELKQGYK DKIVDIREEI LRKRRAGKLP GDTTSLLKAW 300 WQSHSKWPYP TEEDKARLVQ ETGLQLKQIN NWFINQRKRN WHTNPSSSSG SKSKRKSSGA 360 GESSNQSFM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.61230 | 0.0 | hypocotyl| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G095700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003533879.2 | 0.0 | homeobox protein knotted-1-like LET12 isoform X1 | ||||
Refseq | XP_028180864.1 | 0.0 | homeobox protein knotted-1-like LET12 isoform X1 | ||||
Swissprot | P48000 | 1e-164 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | I1L2B3 | 0.0 | I1L2B3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G12820.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1017 | 34 | 108 |
Representative plant | OGRP167 | 17 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-159 | KNOTTED1-like homeobox gene 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G095700.1.p |
Entrez Gene | 100803034 |
Publications ? help Back to Top | |||
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