PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 215aa MW: 23875.2 Da PI: 4.2991

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G072000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	56.8	5.4e-18	20	70	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr +k +g++v+eIr p++ r+r++lg++++ae+Aa+a +aa+ +l+g Glyma.09G072000.1.p 20 SSYRGVRKRK-WGKYVSEIRLPNS---RQRIWLGSYDSAEKAARAFDAAMFCLRG 70 67***999.******933...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.18E-19	20	79	IPR016177	DNA-binding domain
CDD	cd00018	3.86E-29	20	78	No hit	No description
Pfam	PF00847	7.0E-11	20	70	IPR001471	AP2/ERF domain
SMART	SM00380	2.1E-31	21	84	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	7.8E-29	21	79	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	21.035	21	78	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.4E-9	22	33	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.4E-9	44	60	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MVKPKSVEKP AEEQQQRSVS SYRGVRKRKW GKYVSEIRLP NSRQRIWLGS YDSAEKAARA 60 FDAAMFCLRG SGAKFNFPSD PPNIAGGGNM TSSQIQIAAA RFANSEPRNE RSDQPVESLT 120 SDEETASFPV ISDTDTSSPP LSDVTFQNDA ELVTGSFPDM FSDFGSGDFV PDFSDFPSFD 180 DFSRDFFLHE LPGFNFGEEN LDGLIIQDSF LWNF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	8e-16	20	80	13	74	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.5501	0.0	cotyledon\| leaf\| pod\| stem\| vegetative bud

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G072000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031083	0.0	KT031083.1 Glycine max clone HN_CCL_204 AP2-EREBP transcription factor (Glyma09g08330.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003533795.1	1e-155	ethylene-responsive transcription factor ERF017
Refseq	XP_028248625.1	1e-155	ethylene-responsive transcription factor ERF017-like
TrEMBL	A0A445IY13	1e-153	A0A445IY13_GLYSO; Ethylene-responsive transcription factor ERF017
TrEMBL	I1L1S9	1e-153	I1L1S9_SOYBN; AP2-EREBP transcription factor
STRING	GLYMA09G08330.1	1e-154	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1479	33	99
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19210.1	6e-44	ERF family protein

Link Out ? help Back to Top
Phytozome	Glyma.09G072000.1.p
Entrez Gene	100802508

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]