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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G068400.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YA | ||||||||
Protein Properties | Length: 229aa MW: 25223.3 Da PI: 9.9498 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 104.8 | 7.4e-33 | 70 | 126 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakle+++kl +k+rkpylheSRh+hAl+R RgsgGrF Glyma.09G068400.1.p 70 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKNRKPYLHESRHRHALNRVRGSGGRF 126 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 7.7E-37 | 68 | 129 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.224 | 69 | 129 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.2E-28 | 72 | 126 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.0E-24 | 72 | 94 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 74 | 94 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 1.0E-24 | 103 | 126 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MKPFLFLNLP NTEFNSSQVD CNHSMAHSSY PYGDPIFAYG PQAISHPQMI PPMLGLASTR 60 VALPLDLAED GPIYVNAKQY HGILRRRQSR AKLEAQNKLI KNRKPYLHES RHRHALNRVR 120 GSGGRFLSTK QLAQSNAEFV TGAHSGSDPT NRYQKEHLSE VESHSSKDGD NSSFITTCSD 180 RPCLSGNNVN FRQQECMFLG NSANMGGSPQ FSGGLTFGGA KQRTSVVR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 4e-23 | 70 | 131 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G068400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT099370 | 0.0 | BT099370.1 Soybean clone JCVI-FLGm-13B20 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001349752.1 | 1e-171 | nuclear transcription factor Y subunit A-9 | ||||
Refseq | XP_028248028.1 | 1e-171 | nuclear transcription factor Y subunit A-3-like isoform X1 | ||||
TrEMBL | A0A0B2PSG7 | 1e-170 | A0A0B2PSG7_GLYSO; Nuclear transcription factor Y subunit A-3 | ||||
STRING | GLYMA09G07960.4 | 1e-170 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6949 | 31 | 49 |
Representative plant | OGRP680 | 16 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 1e-40 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G068400.1.p |