PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G062400.1.p | ||||||||
Common Name | GLYMA_09G062400, LOC100790522 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 238aa MW: 26645.3 Da PI: 8.329 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.5 | 5.4e-19 | 90 | 144 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++tkeq +Le+ F+ +++++ ++++ LA++l+L+ rqV vWFqNrRa+ k Glyma.09G062400.1.p 90 RKKLKLTKEQSATLEDIFKLHSTLNPAQKQALAEQLNLKHRQVEVWFQNRRARTK 144 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 116.9 | 1.1e-37 | 90 | 179 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLree 90 +kk++l+keq+++LE+ F+ +++L+p +K++la++L+l+ rqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eLr++ Glyma.09G062400.1.p 90 RKKLKLTKEQSATLEDIFKLHSTLNPAQKQALAEQLNLKHRQVEVWFQNRRARTKLKQTEVDCEFLKKCCEKLTDENQRLKKELQELRAQ 179 69*************************************************************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 75 | 140 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.03E-18 | 77 | 147 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.038 | 86 | 146 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-15 | 88 | 150 | IPR001356 | Homeobox domain |
CDD | cd00086 | 9.33E-15 | 90 | 147 | No hit | No description |
Pfam | PF00046 | 2.3E-16 | 90 | 144 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 121 | 144 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 1.9E-10 | 146 | 180 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 8.5E-22 | 146 | 189 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MEDDEACITS LSLGLGIMGG HAQKKENEQK VHCLDLSFEL CPKGKEEVEE AIDVDQQQQQ 60 HANKAKGLLC LKHPNDETSP DSNNSNNGSR KKLKLTKEQS ATLEDIFKLH STLNPAQKQA 120 LAEQLNLKHR QVEVWFQNRR ARTKLKQTEV DCEFLKKCCE KLTDENQRLK KELQELRAQK 180 IGPTPLYIQL SKATTLTICS SCEKLLKPNE GNNKGAISNV IRNSSNKLKN SIELGGI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 146 | RRARTKLKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.52125 | 0.0 | somatic embryo |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G062400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KT031172 | 0.0 | KT031172.1 Glycine max clone HN_CCL_117 homeodomain/HOMEOBOX transcription factor (Glyma15g18320.1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006587005.1 | 1e-172 | homeobox-leucine zipper protein HAT22 | ||||
Refseq | XP_028180487.1 | 1e-172 | homeobox-leucine zipper protein HAT22-like | ||||
Swissprot | P46665 | 6e-54 | HAT14_ARATH; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | A0A445IXY4 | 1e-171 | A0A445IXY4_GLYSO; Homeobox-leucine zipper protein HAT14 | ||||
TrEMBL | K7LC40 | 1e-171 | K7LC40_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G07051.1 | 1e-172 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5664 | 28 | 51 | Representative plant | OGRP196 | 16 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06710.1 | 3e-56 | homeobox from Arabidopsis thaliana |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G062400.1.p |
Entrez Gene | 100790522 |