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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G060200.1.p | ||||||||
Common Name | GLYMA_09G060200, Glyma09g06770.1_like1, LOC100817978 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | bHLH | ||||||||
Protein Properties | Length: 245aa MW: 27883.9 Da PI: 6.1648 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 44.9 | 2.1e-14 | 54 | 97 | 7 | 55 |
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 Er+RR+++N++++ Lr+++P+ + K++Ka+i + A+eYI++L+ Glyma.09G060200.1.p 54 VSERNRRKKLNERLFALRSVVPNiS------KMDKASIIKDAIEYIQHLH 97 57*********************66......*****************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.837 | 47 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-18 | 48 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 4.52E-13 | 50 | 101 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-17 | 53 | 112 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 8.2E-16 | 53 | 102 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 6.0E-12 | 54 | 96 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence Send to blast |
MENIGEEYKH YWETNMFLQT QELDSWGLDE ALSGYYDSSS PDGAASSAAS KNIVSERNRR 60 KKLNERLFAL RSVVPNISKM DKASIIKDAI EYIQHLHEQE KIIQAEIMEL ESGMPRKSPS 120 YGFEQEQLPV VLRSKKKRTE QLYDSVTSRN TPIEVLELRV TYMGEKTVVV SLTCSKRTDT 180 MVKLCEVFES LKLKIITANI TSFSGRLLKT VFIEANEEEK DHLQIKIQTA IKALNNDPLS 240 PMSI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.12279 | 0.0 | flower| hypocotyl| meristem| pod| root |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G060200.1.p |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096690 | 0.0 | BT096690.1 Soybean clone JCVI-FLGm-21E7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001239951.1 | 0.0 | transcription factor bHLH35-like | ||||
Refseq | XP_028181009.1 | 0.0 | transcription factor bHLH35-like | ||||
Swissprot | Q2HIV9 | 6e-93 | BH035_ARATH; Transcription factor bHLH35 | ||||
TrEMBL | A0A445IXU3 | 1e-180 | A0A445IXU3_GLYSO; Transcription factor bHLH35 isoform A | ||||
TrEMBL | C6TGE0 | 1e-180 | C6TGE0_SOYBN; BHLH transcription factor | ||||
STRING | GLYMA09G06770.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3389 | 33 | 69 |
Representative plant | OGRP2753 | 13 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G57150.1 | 6e-86 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G060200.1.p |
Entrez Gene | 100817978 |
Publications ? help Back to Top | |||
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