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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G059700.1.p | ||||||||
Common Name | GLYMA_09G059700, LOC100816912 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HB-PHD | ||||||||
Protein Properties | Length: 715aa MW: 81001.8 Da PI: 8.411 | ||||||||
Description | HB-PHD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.4 | 1.4e-09 | 499 | 542 | 10 | 53 |
HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS Homeobox 10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 + +e L ++F++n p ++ + L+k+lgL+ ++V+ WF+N R+ Glyma.09G059700.1.p 499 DAVEKLRQAFAENELPPRSVKDSLSKELGLDPEKVSKWFKNARY 542 57899*************************************97 PP | |||||||
2 | PHD | 39.7 | 1.1e-13 | 234 | 289 | 1 | 51 |
SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS PHD 1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglkleseekpeg..ewlCeeCkek 51 +C+ C+ + +++++lCd +C+++fH+ Cl+++l++e++p g w+C+ C++k Glyma.09G059700.1.p 234 FCANCKLheAFPDNDIILCDgTCNRAFHQRCLNPPLDTENIPPGdqGWFCKFCECK 289 699999954445********56********************9999*******985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57903 | 1.37E-14 | 226 | 291 | IPR011011 | Zinc finger, FYVE/PHD-type |
Gene3D | G3DSA:3.30.40.10 | 1.1E-12 | 231 | 290 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
PROSITE profile | PS50016 | 10.638 | 232 | 289 | IPR019787 | Zinc finger, PHD-finger |
Pfam | PF00628 | 1.1E-10 | 234 | 289 | IPR019787 | Zinc finger, PHD-finger |
SMART | SM00249 | 3.8E-9 | 234 | 287 | IPR001965 | Zinc finger, PHD-type |
CDD | cd15504 | 2.79E-29 | 234 | 286 | No hit | No description |
PROSITE pattern | PS01359 | 0 | 235 | 286 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:1.10.10.60 | 1.8E-10 | 476 | 541 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 11.37 | 487 | 547 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-7 | 489 | 551 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.56E-9 | 490 | 553 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.06E-7 | 495 | 542 | No hit | No description |
Pfam | PF00046 | 5.1E-7 | 499 | 542 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 715 aa Download sequence Send to blast |
MRDVDSLNSE GSGKSSYSQE QTMSKLVSSK FKTSSTKCQE KKHKVKLKSH KHRAGTNKSK 60 KTVTDSSIKA PLEDSSNKKV IIRKYRHKTD GKSSRMLSST KLEGGKNSHS SGIEGNDVDG 120 EEKIKKHKRR KKKRQRNNMD VDDASRLRRR TRYLLIKMKL EQNLIDAYSG EGWKGQSREK 180 IRPEKELLRA KKQILKCKLN IRDAIRQLDS LSSVGSIEDS AIAPDGSVYH ENIFCANCKL 240 HEAFPDNDII LCDGTCNRAF HQRCLNPPLD TENIPPGDQG WFCKFCECKI EILEATNAHL 300 GTQFSLDSTW QDVFKEEASM PDGDIALLNP EEEWPSDDPE DDDYNPEKKE DSHSIDIEGD 360 DGNASNDSTS SSSLWSLNGE CPPVDEGVSH EYYSVNSCID SNESGEIACG PRQRKAVDYK 420 KLYDEMFGKD APPCEQVSED EDWGPGKRKR REKESDAVNT LMTLHESENK HSNNEKNDTT 480 REGSSGIQIR RSCFRIPVDA VEKLRQAFAE NELPPRSVKD SLSKELGLDP EKVSKWFKNA 540 RYLALKTRRY QSEGEQLQSF TSKISTDSIS QIVEKDELLK STVSKITVIH SQKDGKNITG 600 KEKNNLSDSL LKKRQQQEIP PPLERENGNK DSMEVSNDVK LKKMLKKRKR GVNIIFEGDS 660 QAAELEFERL SKVKRKLDSM KQKLNEVQNC RAKGSNEPSI IYVPTAQLRE KVEK* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 124 | 132 | KKHKRRKKK |
2 | 125 | 135 | KHKRRKKKRQR |
3 | 127 | 133 | KRRKKKR |
4 | 128 | 133 | RRKKKR |
5 | 130 | 135 | KKKRQR |
6 | 447 | 452 | RKRREK |
7 | 640 | 648 | LKKMLKKRK |
8 | 642 | 648 | KMLKKRK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.13999 | 0.0 | root| somatic embryo |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Specifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G059700.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By pathogen infection. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097934 | 1e-161 | BT097934.1 Soybean clone JCVI-FLGm-16O4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003533738.1 | 0.0 | pathogenesis-related homeodomain protein | ||||
Refseq | XP_028248116.1 | 0.0 | pathogenesis-related homeodomain protein-like | ||||
Swissprot | P48785 | 1e-159 | PRH_ARATH; Pathogenesis-related homeodomain protein | ||||
TrEMBL | A0A445IXF0 | 0.0 | A0A445IXF0_GLYSO; Pathogenesis-related homeodomain protein | ||||
TrEMBL | K7LC20 | 0.0 | K7LC20_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G06730.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5275 | 33 | 49 |
Representative plant | OGRP1830 | 15 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G29940.1 | 1e-101 | pathogenesis related homeodomain protein A |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G059700.1.p |
Entrez Gene | 100816912 |
Publications ? help Back to Top | |||
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