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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G052900.1.p | ||||||||
Common Name | GLYMA_09G052900, LOC100500521 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 123aa MW: 14123.8 Da PI: 5.0929 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.9 | 1.3e-18 | 11 | 62 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +g++ AeIrdp++ r +lg+f+taeeAa+a+++a+ +l+g+ Glyma.09G052900.1.p 11 KYRGVRKRP-WGKFGAEIRDPTKpT---GRQWLGTFDTAEEAARAYDRAAIALRGA 62 8********.**********97744...688**********************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.8E-30 | 11 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.499 | 11 | 69 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.48E-30 | 11 | 70 | No hit | No description |
SuperFamily | SSF54171 | 2.16E-22 | 11 | 71 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-11 | 11 | 61 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.9E-33 | 11 | 75 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-11 | 12 | 23 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.8E-11 | 35 | 51 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MEKERGEEEV KYRGVRKRPW GKFGAEIRDP TKPTGRQWLG TFDTAEEAAR AYDRAAIALR 60 GALAILNFPH EFHFHLPFIL SNSSTKGNGS SFDKEVIELE YLDDKVLEEL LELEEKRRNN 120 ED* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-30 | 6 | 106 | 9 | 114 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.36612 | 0.0 | epicotyl |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G052900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT091458 | 0.0 | BT091458.1 Soybean clone JCVI-FLGm-8C21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001235553.1 | 8e-85 | DNA-binding domain-containing protein | ||||
Swissprot | Q9LTC5 | 8e-37 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | C6T202 | 2e-83 | C6T202_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G05850.1 | 3e-84 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF270 | 33 | 215 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43410.1 | 3e-16 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G052900.1.p |
Entrez Gene | 100500521 |
Publications ? help Back to Top | |||
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