PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G052800.1.p
Common NameGLYMA_09G052800
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 119aa    MW: 13234.8 Da    PI: 4.6764
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G052800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.58.1e-1413551055
                  AP2 10 kkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         + +g++ AeIrdp++      r +lg+f+taeeAa+a+++a+ +l+g
  Glyma.09G052800.1.p 13 P-WGKFGAEIRDPTKpT---GRQWLGTFDTAEEAARAYDRAAIELRG 55
                         4.9*********97744...688**********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.954163IPR001471AP2/ERF domain
PRINTSPR003674.0E-5617IPR001471AP2/ERF domain
SuperFamilySSF541714.32E-181165IPR016177DNA-binding domain
SMARTSM003802.5E-231169IPR001471AP2/ERF domain
CDDcd000181.72E-251364No hitNo description
PfamPF008477.2E-71355IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-231364IPR001471AP2/ERF domain
PRINTSPR003674.0E-52945IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MEKSVKKEAN RGPWGKFGAE IRDPTKPTGR QWLGTFDTAE EAARAYDRAA IELRGVLAIL  60
NFPDECYSQL PFVSSNPTST ANGSSFAPTH KEVIEFECLD NKVLEDLLES EVKRRNED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-221110320114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G052800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028248389.14e-75ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC53e-33ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0R0I4493e-82A0A0R0I449_SOYBN; Uncharacterized protein
STRINGGLYMA09G05840.12e-74(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27033215
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.16e-26ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]