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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.09G040000.1.p |
| Common Name | GLYMA_09G040000, LOC100781087 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
ARR-B |
| Protein Properties |
Length: 674aa MW: 73845 Da PI: 6.5522 |
| Description |
ARR-B family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.09G040000.1.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | G2-like | 86.5 | 2.6e-27 | 207 | 260 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++F+ +v+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
Glyma.09G040000.1.p 207 KPRVVWSVELHQQFMAVVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 260
79*******************.********************************8 PP
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| 2 | Response_reg | 75.5 | 1.9e-25 | 31 | 139 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88
vl+vdD+p+ +++l+++l+ y ev+ ++ +e al ll+e++ +D++l D+ mp+mdG++ll++i e +lp+i+++a + ++ + +
Glyma.09G040000.1.p 31 VLVVDDDPTCLMILERMLRACLY-EVTKCKRAEVALSLLRENKngFDIVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKQVVMK 118
89*****************9999.***************999999**********************6654.8***************** PP
HHHTTESEEEESS--HHHHHH CS
Response_reg 89 alkaGakdflsKpfdpeelvk 109
+ Ga d+l Kp+ +e+l +
Glyma.09G040000.1.p 119 GVTHGACDYLIKPVRIEALKN 139
*****************9986 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0000160 | Biological Process | phosphorelay signal transduction system |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 674 aa
Download sequence Send
to blast |
MNLSHGKGST SSSPLKAGDT VSDQFPAGLR VLVVDDDPTC LMILERMLRA CLYEVTKCKR 60
AEVALSLLRE NKNGFDIVLS DVHMPDMDGF KLLEHIGLEM DLPVIMMSAD DGKQVVMKGV 120
THGACDYLIK PVRIEALKNI WQHVVRMRKN GLRDVEQSGS MEEGDRPPKG SDDGNYSSSV 180
NEAKSSKKRR DEDEEGDERD DSSTLKKPRV VWSVELHQQF MAVVNQLGID KAVPKKILEL 240
MNVPGLTREN VASHLQKYRL YLRRLSGVSQ QQGNLSNSFM SSQEATFGGT SINGIDLQTL 300
SAAGQFPSQS LAKFQAAGLG RTTAKAGMPM SLSDQKNLFS FENPRLRFGE GSLQHLSNSK 360
PINLLHGILT NMEPKQLANL HQSTQPLGSL NMRVNSPATQ NKPLLMQMTQ SQPRGQLLSE 420
NASSHVTRYP SSLVQPTVPN GISSGVLGNA IAGTSNITTT YNPVQQNSSL LSFPMNQTNE 480
MSASNFHLRS TPGITSIPNK GMFHEEGTSG VKGSGGFVQG YDMFNDLHHQ KSHDWDLTNT 540
GMTYDASQHA NPLQGNIDVS PSVLVHQSFP SMQQTVQNRD TTSIGKAMFS TGEGMHQSSL 600
QNIGQHHNNL LLDNSVRVKA ERIPDPSCQI NNLFSDQYGQ EDLVSAFLKQ QEGVGTAENE 660
FDFDGYSLDN IPV*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
| Publications
? help Back to Top |
- Takahashi N, et al.
Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
Curr. Biol., 2013. 23(18): p. 1812-7
[PMID:24035544] - Ge XM, et al.
Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
Plant J., 2015. 82(1): p. 138-50
[PMID:25704455] - Takahashi N,Umeda M
Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
Plant Signal Behav, 2014. 9(8): p. e29396
[PMID:25763620] - Kobayashi K, et al.
Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
Plant Physiol., 2017. 173(4): p. 2340-2355
[PMID:28193764] - Arnaud D, et al.
Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
Plant Cell, 2017. 29(3): p. 543-559
[PMID:28254779] - Zhang TQ, et al.
A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
Plant Cell, 2017. 29(5): p. 1073-1087
[PMID:28389585] - Meng WJ, et al.
Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
Plant Cell, 2017. 29(6): p. 1357-1372
[PMID:28576846] - Zhang F,May A,Irish VF
Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
Trends Plant Sci., 2017. 22(10): p. 815-817
[PMID:28886911] - Takatsuka H,Higaki T,Umeda M
Actin Reorganization Triggers Rapid Cell Elongation in Roots.
Plant Physiol., 2018. 178(3): p. 1130-1141
[PMID:30185441]
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