PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.09G040000.1.p | ||||||||
Common Name | GLYMA_09G040000, LOC100781087 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ARR-B | ||||||||
Protein Properties | Length: 674aa MW: 73845 Da PI: 6.5522 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 86.5 | 2.6e-27 | 207 | 260 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++F+ +v+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl Glyma.09G040000.1.p 207 KPRVVWSVELHQQFMAVVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 260 79*******************.********************************8 PP | |||||||
2 | Response_reg | 75.5 | 1.9e-25 | 31 | 139 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHH CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedale 88 vl+vdD+p+ +++l+++l+ y ev+ ++ +e al ll+e++ +D++l D+ mp+mdG++ll++i e +lp+i+++a + ++ + + Glyma.09G040000.1.p 31 VLVVDDDPTCLMILERMLRACLY-EVTKCKRAEVALSLLRENKngFDIVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSADDGKQVVMK 118 89*****************9999.***************999999**********************6654.8***************** PP HHHTTESEEEESS--HHHHHH CS Response_reg 89 alkaGakdflsKpfdpeelvk 109 + Ga d+l Kp+ +e+l + Glyma.09G040000.1.p 119 GVTHGACDYLIKPVRIEALKN 139 *****************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.0E-173 | 4 | 665 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 7.12E-35 | 28 | 148 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 1.2E-40 | 28 | 172 | No hit | No description |
SMART | SM00448 | 9.1E-30 | 29 | 141 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 42.39 | 30 | 145 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.1E-22 | 31 | 139 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 2.87E-27 | 32 | 144 | No hit | No description |
SuperFamily | SSF46689 | 1.43E-19 | 204 | 264 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 10.463 | 204 | 263 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.3E-29 | 206 | 265 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-23 | 207 | 260 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.1E-7 | 209 | 259 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 674 aa Download sequence Send to blast |
MNLSHGKGST SSSPLKAGDT VSDQFPAGLR VLVVDDDPTC LMILERMLRA CLYEVTKCKR 60 AEVALSLLRE NKNGFDIVLS DVHMPDMDGF KLLEHIGLEM DLPVIMMSAD DGKQVVMKGV 120 THGACDYLIK PVRIEALKNI WQHVVRMRKN GLRDVEQSGS MEEGDRPPKG SDDGNYSSSV 180 NEAKSSKKRR DEDEEGDERD DSSTLKKPRV VWSVELHQQF MAVVNQLGID KAVPKKILEL 240 MNVPGLTREN VASHLQKYRL YLRRLSGVSQ QQGNLSNSFM SSQEATFGGT SINGIDLQTL 300 SAAGQFPSQS LAKFQAAGLG RTTAKAGMPM SLSDQKNLFS FENPRLRFGE GSLQHLSNSK 360 PINLLHGILT NMEPKQLANL HQSTQPLGSL NMRVNSPATQ NKPLLMQMTQ SQPRGQLLSE 420 NASSHVTRYP SSLVQPTVPN GISSGVLGNA IAGTSNITTT YNPVQQNSSL LSFPMNQTNE 480 MSASNFHLRS TPGITSIPNK GMFHEEGTSG VKGSGGFVQG YDMFNDLHHQ KSHDWDLTNT 540 GMTYDASQHA NPLQGNIDVS PSVLVHQSFP SMQQTVQNRD TTSIGKAMFS TGEGMHQSSL 600 QNIGQHHNNL LLDNSVRVKA ERIPDPSCQI NNLFSDQYGQ EDLVSAFLKQ QEGVGTAENE 660 FDFDGYSLDN IPV* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 9e-22 | 206 | 266 | 4 | 64 | ARR10-B |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.59704 | 0.0 | cotyledon| root |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in pollen. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:9891419}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.09G040000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AP015035 | 0.0 | AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003533222.1 | 0.0 | two-component response regulator ARR2 isoform X1 | ||||
Swissprot | Q9ZWJ9 | 0.0 | ARR2_ARATH; Two-component response regulator ARR2 | ||||
TrEMBL | I1L0U9 | 0.0 | I1L0U9_SOYBN; Two-component response regulator | ||||
STRING | GLYMA09G04470.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3958 | 34 | 58 | Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16110.1 | 0.0 | response regulator 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.09G040000.1.p |
Entrez Gene | 100781087 |