PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G039300.1.p
Common NameGLYMA_09G039300, LOC100778434
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 759aa    MW: 86847.6 Da    PI: 6.6373
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G039300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.31.6e-2059152190
                 FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHn 86 
                          +fY+++Ak++GFs+r+++++ +    + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k++     +w+vt +++ Hn
  Glyma.09G039300.1.p  59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQIKPSDDGKVQRNRKSSRCGCQAYMRIVKRSdfdVPEWRVTGFRNIHN 148
                          6***************9998874556679*******************9*******************99998776789*********** PP

                 FAR1  87 Hela 90 
                          Hel 
  Glyma.09G039300.1.p 149 HELL 152
                          **96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.1E-1759152IPR004330FAR1 DNA binding domain
PfamPF105519.9E-24275367IPR018289MULE transposase domain
PROSITE profilePS509669.742554587IPR007527Zinc finger, SWIM-type
PfamPF044341.0E-6559584IPR007527Zinc finger, SWIM-type
SMARTSM005757.9E-7562589IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 759 aa     Download sequence    Send to blast
MSEGTSLVLE SSENGTDLSQ DDIGTIEEIP EETILSRQTS VNLVPFIGQR FVSQEAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QIKPSDDGKV QRNRKSSRCG  120
CQAYMRIVKR SDFDVPEWRV TGFRNIHNHE LLKSNEVHLL PAYCPISPDD KGRICMFAKA  180
GMSVRQMLRL MELEKGIKLG CLPFTEIDVR NLLQSFRNVD RDNDAIDLIA MCKRLKDENH  240
NFKYEFKIDS NNRLEHIAWS YSSSIQSYEA FGDAVVFDTT YRVEAYDMVL GIWLGVDNNG  300
MTCFFSCALL RDENIQSFSW ALKAFLGFMK GKAPQTILTD HNMWLKEAIA VELPETKHGF  360
CIWHILSKFS DWFSLFLGSQ YDEWKAEFHR LYNLELVEDF EEGWRQMVDQ YGLHANKHII  420
SLYSLRTFWA LPFLRRYFFA GLTSTCQSES INAFIQQFLS AQSQLDRFVE QVVEIVDFND  480
RAGAKQKMQR KLQKVCLKTG SPIESHAATA LTPYALSKLQ EELVLAPQYA SFLVDEGCFQ  540
VRHHSQSDGG CKVFWVPCQE HISCSCHLFE FSGILCRHVL RVMSTNNCFH IPDQYLPARW  600
RGNNSSSVNH YRGTTSRDQP ERIQFLESMV STFLVESIET EERLDVACDQ ISMVLSRIKT  660
FPRSPHGVND IAYSYPSDSL ILPEVEDTDG MIPGFTITNP HDSITTGKLK ERRARDVVDL  720
TRKRRQFSMP LCAQYGHDAS DCSIMASDNM SGDALGYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1720725TRKRRQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.419430.0vegetative bud
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G039300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534827.10.0protein FAR1-RELATED SEQUENCE 11
RefseqXP_014617387.10.0protein FAR1-RELATED SEQUENCE 11
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLK7LBQ80.0K7LBQ8_SOYBN; Uncharacterized protein
STRINGGLYMA09G04394.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]