PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.09G039300.1.p

Common Name

GLYMA_09G039300, LOC100778434

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 759aa MW: 86847.6 Da PI: 6.6373

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G039300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	65.3	1.6e-20	59	152	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHn 86 +fY+++Ak++GFs+r+++++ + + +t+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k++ +w+vt +++ Hn Glyma.09G039300.1.p 59 EFYCSFAKQCGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGYPQIKPSDDGKVQRNRKSSRCGCQAYMRIVKRSdfdVPEWRVTGFRNIHN 148 6*************9998874556679***************9***************99998776789******* PP FAR1 87 Hela 90 Hel Glyma.09G039300.1.p 149 HELL 152 96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-17	59	152	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	9.9E-24	275	367	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.742	554	587	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.0E-6	559	584	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	7.9E-7	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 759 aa Download sequence Send to blast
MSEGTSLVLE SSENGTDLSQ DDIGTIEEIP EETILSRQTS VNLVPFIGQR FVSQEAAYEF 60 YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QIKPSDDGKV QRNRKSSRCG 120 CQAYMRIVKR SDFDVPEWRV TGFRNIHNHE LLKSNEVHLL PAYCPISPDD KGRICMFAKA 180 GMSVRQMLRL MELEKGIKLG CLPFTEIDVR NLLQSFRNVD RDNDAIDLIA MCKRLKDENH 240 NFKYEFKIDS NNRLEHIAWS YSSSIQSYEA FGDAVVFDTT YRVEAYDMVL GIWLGVDNNG 300 MTCFFSCALL RDENIQSFSW ALKAFLGFMK GKAPQTILTD HNMWLKEAIA VELPETKHGF 360 CIWHILSKFS DWFSLFLGSQ YDEWKAEFHR LYNLELVEDF EEGWRQMVDQ YGLHANKHII 420 SLYSLRTFWA LPFLRRYFFA GLTSTCQSES INAFIQQFLS AQSQLDRFVE QVVEIVDFND 480 RAGAKQKMQR KLQKVCLKTG SPIESHAATA LTPYALSKLQ EELVLAPQYA SFLVDEGCFQ 540 VRHHSQSDGG CKVFWVPCQE HISCSCHLFE FSGILCRHVL RVMSTNNCFH IPDQYLPARW 600 RGNNSSSVNH YRGTTSRDQP ERIQFLESMV STFLVESIET EERLDVACDQ ISMVLSRIKT 660 FPRSPHGVND IAYSYPSDSL ILPEVEDTDG MIPGFTITNP HDSITTGKLK ERRARDVVDL 720 TRKRRQFSMP LCAQYGHDAS DCSIMASDNM SGDALGYL*

Sequence ? help Back to Top

Protein Sequence Length: 759 aa Download sequence Send to blast

MSEGTSLVLE SSENGTDLSQ DDIGTIEEIP EETILSRQTS VNLVPFIGQR FVSQEAAYEF  60
YCSFAKQCGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGYP QIKPSDDGKV QRNRKSSRCG  120
CQAYMRIVKR SDFDVPEWRV TGFRNIHNHE LLKSNEVHLL PAYCPISPDD KGRICMFAKA  180
GMSVRQMLRL MELEKGIKLG CLPFTEIDVR NLLQSFRNVD RDNDAIDLIA MCKRLKDENH  240
NFKYEFKIDS NNRLEHIAWS YSSSIQSYEA FGDAVVFDTT YRVEAYDMVL GIWLGVDNNG  300
MTCFFSCALL RDENIQSFSW ALKAFLGFMK GKAPQTILTD HNMWLKEAIA VELPETKHGF  360
CIWHILSKFS DWFSLFLGSQ YDEWKAEFHR LYNLELVEDF EEGWRQMVDQ YGLHANKHII  420
SLYSLRTFWA LPFLRRYFFA GLTSTCQSES INAFIQQFLS AQSQLDRFVE QVVEIVDFND  480
RAGAKQKMQR KLQKVCLKTG SPIESHAATA LTPYALSKLQ EELVLAPQYA SFLVDEGCFQ  540
VRHHSQSDGG CKVFWVPCQE HISCSCHLFE FSGILCRHVL RVMSTNNCFH IPDQYLPARW  600
RGNNSSSVNH YRGTTSRDQP ERIQFLESMV STFLVESIET EERLDVACDQ ISMVLSRIKT  660
FPRSPHGVND IAYSYPSDSL ILPEVEDTDG MIPGFTITNP HDSITTGKLK ERRARDVVDL  720
TRKRRQFSMP LCAQYGHDAS DCSIMASDNM SGDALGYL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	720	725	TRKRRQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.41943	0.0	vegetative bud

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G039300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003534827.1	0.0	protein FAR1-RELATED SEQUENCE 11
Refseq	XP_014617387.1	0.0	protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	K7LBQ8	0.0	K7LBQ8_SOYBN; Uncharacterized protein
STRING	GLYMA09G04394.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Glyma.09G039300.1.p
Entrez Gene	100778434

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]