PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G038900.2.p | ||||||||
Common Name | GLYMA_09G038900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 248aa MW: 27824.7 Da PI: 4.3133 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.1 | 1.9e-08 | 2 | 25 | 24 | 48 |
HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqkyl 48 W+ Ia +++ gRt++++k++w+++l Glyma.09G038900.2.p 2 WSVIAGHLP-GRTDNEIKNYWNSHL 25 *********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.061 | 1 | 29 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.4E-12 | 2 | 26 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.24E-7 | 2 | 35 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.08E-5 | 2 | 25 | No hit | No description |
Pfam | PF00249 | 3.7E-6 | 2 | 25 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MWSVIAGHLP GRTDNEIKNY WNSHLRRKIY CFMRSLNESL PPIDMAAINS ATSKRRVRGS 60 RNKPTTEEEK NIALSQNSFE SMPSCNREEG EEISMMDACY EMEGITVSSK AASYPSLEDS 120 LGPYHHWSDD EIMKLSNMFE NGVLVNPCGN DLTLKEEPNG NECGQMNVDV MGTDQSKNNG 180 VWNSSNGESG EWYPNCSSVN SVIDYQWSDW DMGGSVQSNN QWNLCDDQVM NCLWSTGIGE 240 INYGFHP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.15808 | 0.0 | cotyledon |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G038900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003533213.1 | 0.0 | transcription factor MYB13 | ||||
Refseq | XP_028180329.1 | 0.0 | transcription factor MYB13-like | ||||
TrEMBL | K7LBQ3 | 0.0 | K7LBQ3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G04370.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 1e-14 | myb domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G038900.2.p |