PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.09G038300.1.p | ||||||||
Common Name | GLYMA_09G038300, LOC100776839 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 912aa MW: 102969 Da PI: 7.0194 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 163.1 | 5.1e-51 | 33 | 148 | 3 | 118 |
CG-1 3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 + k+rwl+++ei+aiL n++ +++ +++ + pksg+++L++rk++r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah++++p Glyma.09G038300.1.p 33 EAKSRWLRPNEIHAILCNHKYFKINAKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKTDGKTVKEAHEHLKVGNEERIHVYYAHGQDKP 122 459*************************************************************************************** PP CG-1 93 tfqrrcywlLeeelekivlvhylevk 118 tf rrcywlL+++le+ivlvhy++++ Glyma.09G038300.1.p 123 TFVRRCYWLLDKSLEHIVLVHYRDTQ 148 ***********************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 74.568 | 27 | 153 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 1.8E-75 | 31 | 148 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 6.7E-46 | 33 | 146 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 5.8E-5 | 346 | 449 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 3.92E-15 | 360 | 447 | IPR014756 | Immunoglobulin E-set |
CDD | cd00204 | 5.13E-14 | 545 | 655 | No hit | No description |
Gene3D | G3DSA:1.25.40.20 | 7.9E-14 | 545 | 658 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 2.2E-7 | 550 | 625 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 4.82E-16 | 554 | 658 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 15.486 | 563 | 628 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0058 | 596 | 625 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.259 | 596 | 628 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 190 | 706 | 728 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 6.723 | 707 | 736 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 110 | 759 | 781 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.089 | 760 | 789 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 2.7E-4 | 782 | 804 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 10.402 | 783 | 807 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.1E-4 | 784 | 804 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 9.5 | 861 | 883 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.078 | 863 | 891 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0001077 | Molecular Function | transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 912 aa Download sequence Send to blast |
MMMSHNLTGQ LVGAEIHGFH TLDDLDVSNT MEEAKSRWLR PNEIHAILCN HKYFKINAKP 60 VNLPKSGTIV LFDRKMLRNF RKDGHNWKKK TDGKTVKEAH EHLKVGNEER IHVYYAHGQD 120 KPTFVRRCYW LLDKSLEHIV LVHYRDTQEL QLQGSPATPV NSNSSSVSDS AASWIPSDDL 180 DSGVNSAYAV ELNDSLTAKS HEQRLHEINT LEWDDLVVSN ANTSTTSNGG NVPYSFQQNQ 240 SLLNGSFGNV SSDPSAEIPS FGNLTQLVSG SDSAPYSFPE SADLLKSSPL SSGGVDTLGT 300 LVNEGLQSQD SFGTWMNIMS DTPCSIDESA LEATTSSVHV PYSSLVADNK QSSLPEQVFN 360 LTEVSPVWAS STEKTKVLVT GYFHNNYQHL AKSNLLCVCG DVSVPVEIVQ VGVYRCWVSP 420 HSPGLVTLYL SFDGHKPISQ VVNFEYRTPI LHEPTALIEE KYNWDEFRLQ MRLAHLLFAS 480 DKSLNIFSSK VSTNALKEAR RFSFKTSYIS KSWQHLMKSI DDKTIPFSQV KDALFETSLK 540 NKLKEWLLER IILGSKSTEY DAQGQAAIHL CAMLGYNWAI SLFTWSGLSL DFRDKFGWTA 600 LHWAAYYGIE KMVATLLSCG ARPNLVTDPT PQYPGGCTAA DLAYVKGCDG LAAYLSEKSL 660 VEQFNDMSLA GNISGSLETS STDPVNAANL TEDQLYLKET LEAYRTAAEA AARIQAAFRE 720 HSFKLRYQAV EIMSPEEEAR QIVAAMRIQH AFRNYESKKK MAAAARIQLR FRTWKYRREF 780 LNMRRQAIKI QAAFRGFQAR KQYRKIVWSV GVLEKVILRW LLKRKGFRGL QVNPAEEETQ 840 ESDTIAEEDF FRTSRKQAEE RVERSVIRVQ AMFRSKKAQE EYRRMKLTHN QAMLDELEEF 900 LNSEDDMLPK T* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.44995 | 0.0 | hypocotyl |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.09G038300.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006586900.1 | 0.0 | calmodulin-binding transcription activator 5 | ||||
Swissprot | O23463 | 0.0 | CMTA5_ARATH; Calmodulin-binding transcription activator 5 | ||||
TrEMBL | I1L0T3 | 0.0 | I1L0T3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G04310.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4288 | 34 | 59 | Representative plant | OGRP7351 | 11 | 16 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G16150.1 | 0.0 | calmodulin binding;transcription regulators |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.09G038300.1.p |
Entrez Gene | 100776839 |
Publications ? help Back to Top | |||
---|---|---|---|
|