PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G038300.1.p
Common NameGLYMA_09G038300, LOC100776839
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 912aa    MW: 102969 Da    PI: 7.0194
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G038300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1163.15.1e-51331483118
                 CG-1   3 kekkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 
                          + k+rwl+++ei+aiL n++ +++ +++ + pksg+++L++rk++r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah++++p
  Glyma.09G038300.1.p  33 EAKSRWLRPNEIHAILCNHKYFKINAKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKTDGKTVKEAHEHLKVGNEERIHVYYAHGQDKP 122
                          459*************************************************************************************** PP

                 CG-1  93 tfqrrcywlLeeelekivlvhylevk 118
                          tf rrcywlL+++le+ivlvhy++++
  Glyma.09G038300.1.p 123 TFVRRCYWLLDKSLEHIVLVHYRDTQ 148
                          ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143774.56827153IPR005559CG-1 DNA-binding domain
SMARTSM010761.8E-7531148IPR005559CG-1 DNA-binding domain
PfamPF038596.7E-4633146IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.105.8E-5346449IPR013783Immunoglobulin-like fold
SuperFamilySSF812963.92E-15360447IPR014756Immunoglobulin E-set
CDDcd002045.13E-14545655No hitNo description
Gene3DG3DSA:1.25.40.207.9E-14545658IPR020683Ankyrin repeat-containing domain
PfamPF127962.2E-7550625IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.82E-16554658IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.486563628IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0058596625IPR002110Ankyrin repeat
PROSITE profilePS5008810.259596628IPR002110Ankyrin repeat
SMARTSM00015190706728IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500966.723707736IPR000048IQ motif, EF-hand binding site
SMARTSM00015110759781IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.089760789IPR000048IQ motif, EF-hand binding site
SMARTSM000152.7E-4782804IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.402783807IPR000048IQ motif, EF-hand binding site
PfamPF006122.1E-4784804IPR000048IQ motif, EF-hand binding site
SMARTSM000159.5861883IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.078863891IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001077Molecular Functiontranscriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 912 aa     Download sequence    Send to blast
MMMSHNLTGQ LVGAEIHGFH TLDDLDVSNT MEEAKSRWLR PNEIHAILCN HKYFKINAKP  60
VNLPKSGTIV LFDRKMLRNF RKDGHNWKKK TDGKTVKEAH EHLKVGNEER IHVYYAHGQD  120
KPTFVRRCYW LLDKSLEHIV LVHYRDTQEL QLQGSPATPV NSNSSSVSDS AASWIPSDDL  180
DSGVNSAYAV ELNDSLTAKS HEQRLHEINT LEWDDLVVSN ANTSTTSNGG NVPYSFQQNQ  240
SLLNGSFGNV SSDPSAEIPS FGNLTQLVSG SDSAPYSFPE SADLLKSSPL SSGGVDTLGT  300
LVNEGLQSQD SFGTWMNIMS DTPCSIDESA LEATTSSVHV PYSSLVADNK QSSLPEQVFN  360
LTEVSPVWAS STEKTKVLVT GYFHNNYQHL AKSNLLCVCG DVSVPVEIVQ VGVYRCWVSP  420
HSPGLVTLYL SFDGHKPISQ VVNFEYRTPI LHEPTALIEE KYNWDEFRLQ MRLAHLLFAS  480
DKSLNIFSSK VSTNALKEAR RFSFKTSYIS KSWQHLMKSI DDKTIPFSQV KDALFETSLK  540
NKLKEWLLER IILGSKSTEY DAQGQAAIHL CAMLGYNWAI SLFTWSGLSL DFRDKFGWTA  600
LHWAAYYGIE KMVATLLSCG ARPNLVTDPT PQYPGGCTAA DLAYVKGCDG LAAYLSEKSL  660
VEQFNDMSLA GNISGSLETS STDPVNAANL TEDQLYLKET LEAYRTAAEA AARIQAAFRE  720
HSFKLRYQAV EIMSPEEEAR QIVAAMRIQH AFRNYESKKK MAAAARIQLR FRTWKYRREF  780
LNMRRQAIKI QAAFRGFQAR KQYRKIVWSV GVLEKVILRW LLKRKGFRGL QVNPAEEETQ  840
ESDTIAEEDF FRTSRKQAEE RVERSVIRVQ AMFRSKKAQE EYRRMKLTHN QAMLDELEEF  900
LNSEDDMLPK T*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.449950.0hypocotyl
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen, top of sepals and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:28351986, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G038300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269|PubMed:12218065}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006586900.10.0calmodulin-binding transcription activator 5
SwissprotO234630.0CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBLI1L0T30.0I1L0T3_SOYBN; Uncharacterized protein
STRINGGLYMA09G04310.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42883459
Representative plantOGRP73511116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16150.10.0calmodulin binding;transcription regulators
Publications ? help Back to Top
  1. Ye J, et al.
    Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes.
    Plant Cell, 2009. 21(12): p. 3868-84
    [PMID:20023198]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]
  3. Lan Y,Liu X,Fu Y,Huang S
    Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips.
    PLoS Genet., 2018. 14(11): p. e1007789
    [PMID:30418966]