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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Glyma.09G034100.1.p | ||||||||
| Common Name | GLYMA_09G034100, LOC102661343 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 344aa MW: 39118.5 Da PI: 7.4641 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 12.8 | 0.00037 | 24 | 44 | 1 | 21 |
EEETTTTEEESSHHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHir 21
y C++C k F ++ L H+r
Glyma.09G034100.1.p 24 YHCSYCEKAFENSQGLGDHQR 44
89*****************98 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 6.61E-5 | 20 | 47 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 7.7E-5 | 21 | 44 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 10.076 | 24 | 51 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003676 | Molecular Function | nucleic acid binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 344 aa Download sequence Send to blast |
MFTFMMNLSS NSSKENGKRK EKGYHCSYCE KAFENSQGLG DHQRLYEVEI KQHNNQMIHF 60 QNSKDVTKSN PGHGDALMKA LSRGTTNNPY VTKGNYYGGY SREDHNSLFM PPNYSSARTD 120 NASLVTSIQY KETIPFSQSV DYPIYMSSFS NHIGGASSSI NHQFDASNPQ FFIDSFSKPF 180 KSNFWKNEHN DPNLTYPVLV RNSSLPGYHM ADFSLWNFNT NKFPSPIEPN VVDTQINFVG 240 SNNSYSYNVD QIYEKVKNHN RDEVQEKIPM MNPPKMPNIN FGPLVNHGIE MLQKKEAWFS 300 TKETKLKAVE AIFGKDEGKN ASTSKSANFI KEQEVDLDLS LHL* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Glyma.09G034100.1.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_014617237.1 | 0.0 | uncharacterized protein LOC102661343 isoform X1 | ||||
| TrEMBL | A0A0R0I387 | 0.0 | A0A0R0I387_SOYBN; Uncharacterized protein | ||||
| STRING | GLYMA09G03881.1 | 0.0 | (Glycine max) | ||||
| Link Out ? help Back to Top | |
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| Phytozome | Glyma.09G034100.1.p |
| Entrez Gene | 102661343 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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