PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G029300.2.p
Common NameGLYMA_09G029300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 300aa    MW: 33055.8 Da    PI: 10.1644
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G029300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.5e-12556147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                         +++WT+eE++ l+ +v ++G g W+tI +          R+  ++k++w+++
  Glyma.09G029300.2.p  5 KQKWTAEEEQALKAGVVKHGVGKWRTILKDPEfssvlYLRSNVDLKDKWRNL 56
                         79***********************************88***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.192158IPR017930Myb domain
SuperFamilySSF466891.93E-16271IPR009057Homeodomain-like
SMARTSM007171.8E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-13556IPR009057Homeodomain-like
PfamPF002491.9E-8556IPR001005SANT/Myb domain
CDDcd116603.46E-19656No hitNo description
SMARTSM005267.0E-9118183IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467858.16E-15118197IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.5E-12119188IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.783120188IPR005818Linker histone H1/H5, domain H15
PfamPF005382.6E-7123181IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MGAPKQKWTA EEEQALKAGV VKHGVGKWRT ILKDPEFSSV LYLRSNVDLK DKWRNLSVMA  60
NGWSSREKSR LSVRRVHQVP RQDENSMAIT AVAPSDEEIV DVKPLQVSRD MVHIPGPKRS  120
NLSLDKLIME AITCLKENGG SNKTAIAAFI EDQYWALPGL KSMLSAKLKF LTASGKLIKV  180
NRKYRIAPIA AYSDRRRNSS VLYLEGRQKA SMKIDRDETN ILTRSQIDLE LEKIRSMTPQ  240
EAAAFAARAV AEAEAAIAEA EEAAKEAEAA EADAEAAQAF ADATTKSAKG RKSPKRIHA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.328340.0cotyledon| epicotyl| meristem| seed coat| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G029300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0983180.0BT098318.1 Soybean clone JCVI-FLGm-23G7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001341119.10.0MYB transcription factor isoform 1
RefseqNP_001341120.10.0MYB transcription factor isoform 1
RefseqXP_028180708.10.0telomere repeat-binding factor 1-like
RefseqXP_028180709.10.0telomere repeat-binding factor 1-like
SwissprotQ8VWK42e-96TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A0B2SIK80.0A0A0B2SIK8_GLYSO; Histone H1
TrEMBLA0A0R0I3030.0A0A0R0I303_SOYBN; Uncharacterized protein
TrEMBLI1L0K30.0I1L0K3_SOYBN; Uncharacterized protein
STRINGGLYMA09G03390.11e-180(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.32e-97telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]