PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB_related

Protein Properties

Length: 300aa MW: 33055.8 Da PI: 10.1644

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G029300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	37.3	6.5e-12	5	56	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT+eE++ l+ +v ++G g W+tI + R+ ++k++w+++ Glyma.09G029300.2.p 5 KQKWTAEEEQALKAGVVKHGVGKWRTILKDPEfssvlYLRSNVDLKDKWRNL 56 79*********************************88*********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.192	1	58	IPR017930	Myb domain
SuperFamily	SSF46689	1.93E-16	2	71	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-7	4	59	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-13	5	56	IPR009057	Homeodomain-like
Pfam	PF00249	1.9E-8	5	56	IPR001005	SANT/Myb domain
CDD	cd11660	3.46E-19	6	56	No hit	No description
SMART	SM00526	7.0E-9	118	183	IPR005818	Linker histone H1/H5, domain H15
SuperFamily	SSF46785	8.16E-15	118	197	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	2.5E-12	119	188	IPR011991	Winged helix-turn-helix DNA-binding domain
PROSITE profile	PS51504	23.783	120	188	IPR005818	Linker histone H1/H5, domain H15
Pfam	PF00538	2.6E-7	123	181	IPR005818	Linker histone H1/H5, domain H15

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006334	Biological Process	nucleosome assembly
GO:0000786	Cellular Component	nucleosome
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MGAPKQKWTA EEEQALKAGV VKHGVGKWRT ILKDPEFSSV LYLRSNVDLK DKWRNLSVMA 60 NGWSSREKSR LSVRRVHQVP RQDENSMAIT AVAPSDEEIV DVKPLQVSRD MVHIPGPKRS 120 NLSLDKLIME AITCLKENGG SNKTAIAAFI EDQYWALPGL KSMLSAKLKF LTASGKLIKV 180 NRKYRIAPIA AYSDRRRNSS VLYLEGRQKA SMKIDRDETN ILTRSQIDLE LEKIRSMTPQ 240 EAAAFAARAV AEAEAAIAEA EEAAKEAEAA EADAEAAQAF ADATTKSAKG RKSPKRIHA*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.32834	0.0	cotyledon\| epicotyl\| meristem\| seed coat\| somatic embryo

Functional Description ? help Back to Top
Source	Description
UniProt	Binds preferentially double-stranded telomeric repeats. {ECO:0000269\|PubMed:19102728}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G029300.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT098318	0.0	BT098318.1 Soybean clone JCVI-FLGm-23G7 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001341119.1	0.0	MYB transcription factor isoform 1
Refseq	NP_001341120.1	0.0	MYB transcription factor isoform 1
Refseq	XP_028180708.1	0.0	telomere repeat-binding factor 1-like
Refseq	XP_028180709.1	0.0	telomere repeat-binding factor 1-like
Swissprot	Q8VWK4	2e-96	TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBL	A0A0B2SIK8	0.0	A0A0B2SIK8_GLYSO; Histone H1
TrEMBL	A0A0R0I303	0.0	A0A0R0I303_SOYBN; Uncharacterized protein
TrEMBL	I1L0K3	0.0	I1L0K3_SOYBN; Uncharacterized protein
STRING	GLYMA09G03390.1	1e-180	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49950.3	2e-97	telomere repeat binding factor 1

Link Out ? help Back to Top
Phytozome	Glyma.09G029300.2.p

Publications ? help Back to Top
Alexandrov NN, et al. Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] Schrumpfová PP, et al. Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] Liang SC, et al. Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] Fulcher N,Riha K Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] Kotliński M, et al. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]