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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.09G029300.1.p |
Common Name | GLYMA_09G029300 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MYB_related |
Protein Properties |
Length: 350aa MW: 38547.3 Da PI: 10.0848 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.09G029300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 36.9 | 8.3e-12 | 55 | 106 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
+++WT+eE++ l+ +v ++G g W+tI + R+ ++k++w+++
Glyma.09G029300.1.p 55 KQKWTAEEEQALKAGVVKHGVGKWRTILKDPEfssvlYLRSNVDLKDKWRNL 106
79***********************************88***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MLVSGPVSSS FSFSLPLYFV ADISQILLLG FRRTIRNSIV LAESVSDLYV MGAPKQKWTA 60 EEEQALKAGV VKHGVGKWRT ILKDPEFSSV LYLRSNVDLK DKWRNLSVMA NGWSSREKSR 120 LSVRRVHQVP RQDENSMAIT AVAPSDEEIV DVKPLQVSRD MVHIPGPKRS NLSLDKLIME 180 AITCLKENGG SNKTAIAAFI EDQYWALPGL KSMLSAKLKF LTASGKLIKV NRKYRIAPIA 240 AYSDRRRNSS VLYLEGRQKA SMKIDRDETN ILTRSQIDLE LEKIRSMTPQ EAAAFAARAV 300 AEAEAAIAEA EEAAKEAEAA EADAEAAQAF ADATTKSAKG RKSPKRIHA*
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Gma.32834 | 0.0 | cotyledon| epicotyl| meristem| seed coat| somatic embryo |
Functional Description ? help
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Source |
Description |
UniProt | Binds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}. |
Publications
? help Back to Top |
- Alexandrov NN, et al.
Features of Arabidopsis genes and genome discovered using full-length cDNAs. Plant Mol. Biol., 2006. 60(1): p. 69-85 [PMID:16463100] - Schrumpfová PP, et al.
Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase. Plant J., 2014. 77(5): p. 770-81 [PMID:24397874] - Liang SC, et al.
Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2. PLoS Genet., 2015. 11(12): p. e1005660 [PMID:26642436] - Fulcher N,Riha K
Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana. Front Genet, 2015. 6: p. 349 [PMID:26779251] - Kotliński M, et al.
Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain. Plant Physiol., 2017. 174(1): p. 27-34 [PMID:28298478]
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