PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.09G029300.1.p
Common NameGLYMA_09G029300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 350aa    MW: 38547.3 Da    PI: 10.0848
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.09G029300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.98.3e-1255106147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 
                          +++WT+eE++ l+ +v ++G g W+tI +          R+  ++k++w+++
  Glyma.09G029300.1.p  55 KQKWTAEEEQALKAGVVKHGVGKWRTILKDPEfssvlYLRSNVDLKDKWRNL 106
                          79***********************************88***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.46E-1652121IPR009057Homeodomain-like
SMARTSM007171.8E-754109IPR001005SANT/Myb domain
PROSITE profilePS500907.66655107IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.3E-1355106IPR009057Homeodomain-like
PfamPF002492.4E-855106IPR001005SANT/Myb domain
CDDcd116601.97E-1956106No hitNo description
SMARTSM005267.0E-9168233IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.14E-14168247IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.3E-12169238IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.783170238IPR005818Linker histone H1/H5, domain H15
PfamPF005383.4E-7173231IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MLVSGPVSSS FSFSLPLYFV ADISQILLLG FRRTIRNSIV LAESVSDLYV MGAPKQKWTA  60
EEEQALKAGV VKHGVGKWRT ILKDPEFSSV LYLRSNVDLK DKWRNLSVMA NGWSSREKSR  120
LSVRRVHQVP RQDENSMAIT AVAPSDEEIV DVKPLQVSRD MVHIPGPKRS NLSLDKLIME  180
AITCLKENGG SNKTAIAAFI EDQYWALPGL KSMLSAKLKF LTASGKLIKV NRKYRIAPIA  240
AYSDRRRNSS VLYLEGRQKA SMKIDRDETN ILTRSQIDLE LEKIRSMTPQ EAAAFAARAV  300
AEAEAAIAEA EEAAKEAEAA EADAEAAQAF ADATTKSAKG RKSPKRIHA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.328340.0cotyledon| epicotyl| meristem| seed coat| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000269|PubMed:19102728}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.09G029300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0983180.0BT098318.1 Soybean clone JCVI-FLGm-23G7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001341119.10.0MYB transcription factor isoform 1
RefseqNP_001341120.10.0MYB transcription factor isoform 1
RefseqXP_028180708.10.0telomere repeat-binding factor 1-like
RefseqXP_028180709.10.0telomere repeat-binding factor 1-like
SwissprotQ8VWK41e-95TRB1_ARATH; Telomere repeat-binding factor 1
TrEMBLA0A0R0I3030.0A0A0R0I303_SOYBN; Uncharacterized protein
STRINGGLYMA15G14320.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145333101
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.34e-97telomere repeat binding factor 1
Publications ? help Back to Top
  1. Alexandrov NN, et al.
    Features of Arabidopsis genes and genome discovered using full-length cDNAs.
    Plant Mol. Biol., 2006. 60(1): p. 69-85
    [PMID:16463100]
  2. Schrumpfová PP, et al.
    Telomere repeat binding proteins are functional components of Arabidopsis telomeres and interact with telomerase.
    Plant J., 2014. 77(5): p. 770-81
    [PMID:24397874]
  3. Liang SC, et al.
    Kicking against the PRCs - A Domesticated Transposase Antagonises Silencing Mediated by Polycomb Group Proteins and Is an Accessory Component of Polycomb Repressive Complex 2.
    PLoS Genet., 2015. 11(12): p. e1005660
    [PMID:26642436]
  4. Fulcher N,Riha K
    Using Centromere Mediated Genome Elimination to Elucidate the Functional Redundancy of Candidate Telomere Binding Proteins in Arabidopsis thaliana.
    Front Genet, 2015. 6: p. 349
    [PMID:26779251]
  5. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]