![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.09G025800.1.p | ||||||||
Common Name | GLYMA_09G025800, LOC100794552 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 714aa MW: 81359.9 Da PI: 7.867 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.3 | 1.3e-18 | 29 | 81 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++++q ++LeelF+k+++p++ er+++Ak lgL+ +qVk+WFqN+R+++k Glyma.09G025800.1.p 29 YRRHKEDQRTRLEELFRKCPNPDEIERRQIAKDLGLEPKQVKFWFQNKRTQKK 81 567899********************************************998 PP | |||||||
2 | START | 126.5 | 3.2e-40 | 231 | 452 | 2 | 206 |
HHHHHHHHHHHHHHHC-TT-EEEE.......EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S. CS START 2 laeeaaqelvkkalaeepgWvkss.......esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla. 77 +a +a +el+k+ +ep+Wvkss e++ ++ + + ++e +++s++v + +lv ll++ W + + Glyma.09G025800.1.p 231 IAVAAKDELLKLLRTNEPLWVKSStdqryvlH----LECYETIFPRINhfknskARVESSKDSRIVRIKAKELVDMLLNSE-IWENLFSr 315 688999******************65543321....3344433333335677777****************9**9999999.66666666 PP ...EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS START 78 ...kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157 ka t++v+++g g+l lm e+ +lsplvp R+f+f+Ry+ q +a +wvi+dvSvd ++++ ++++ R +pSg++i+ Glyma.09G025800.1.p 316 ivtKARTIQVLENGslenrsGVLLLMREEMHVLSPLVPsREFYFLRYCHQVEANVWVIADVSVDCMKENNHDPNCWR---FPSGCMIQGI 402 666*****************************************************************999999999...********** PP CTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 158 snghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206 sng ++v wvehv++++++ h l++ lv++ +a ga +w+ lqr ce+ Glyma.09G025800.1.p 403 SNGMCQVSWVEHVEVDEKIQtHHLFKDLVNRNIAYGAERWLLELQRMCER 452 *******************99***************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-17 | 11 | 65 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.09E-16 | 11 | 82 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.208 | 23 | 83 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.9E-14 | 25 | 87 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.7E-16 | 30 | 81 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.05E-14 | 30 | 81 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 58 | 81 | IPR017970 | Homeobox, conserved site |
Gene3D | G3DSA:1.10.10.60 | 8.1E-4 | 66 | 111 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50848 | 43.716 | 221 | 455 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.47E-28 | 222 | 453 | No hit | No description |
CDD | cd08875 | 1.05E-89 | 225 | 451 | No hit | No description |
SMART | SM00234 | 1.8E-25 | 230 | 452 | IPR002913 | START domain |
Pfam | PF01852 | 1.1E-33 | 231 | 452 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 9.3E-6 | 288 | 421 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.61E-10 | 476 | 704 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 714 aa Download sequence Send to blast |
MDFAMGAAGG SGDDQHNQSL NKGKKTTTYR RHKEDQRTRL EELFRKCPNP DEIERRQIAK 60 DLGLEPKQVK FWFQNKRTQK KTISERVDNN VLRVENERMH NENLVLREAL KTIICPSCGG 120 PHNEEERREL CLEQLRLENA RLKAQHEKLS KFLVQHMDKP ILEQNLDSPI RGSSSHGPLL 180 GSSLRLRAGR SRMNLGASTS HDSFQDEEDT MSSQAGSKII TQMEKTMMAH IAVAAKDELL 240 KLLRTNEPLW VKSSTDQRYV LHLECYETIF PRINHFKNSK ARVESSKDSR IVRIKAKELV 300 DMLLNSEIWE NLFSRIVTKA RTIQVLENGS LENRSGVLLL MREEMHVLSP LVPSREFYFL 360 RYCHQVEANV WVIADVSVDC MKENNHDPNC WRFPSGCMIQ GISNGMCQVS WVEHVEVDEK 420 IQTHHLFKDL VNRNIAYGAE RWLLELQRMC ERFTSLEVEY IPNYDIGGVI TTLGGRMSMM 480 KFSHQMVKSF YGILNMSSIT DFPQHLADEN TGIRICARKV TNSNQSNPNI IITATTSFRL 540 PLPSQNVFDF FRDPIRRVKW DAMCYKRPLH EIARISTGTH PNNYISIIQP IHPTANNVVI 600 IQESCTDPLG SYVVYSSTNI LDIKRTINGE DSSTMPFFPS GIVISEEGQS ITNARASSSG 660 NGDVRTRGSL LTVAFQILMN SSPTMMMEFV TVVNSLITST VENINDALIS SFN* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.09G025800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006586851.1 | 0.0 | homeobox-leucine zipper protein HDG11 isoform X2 | ||||
TrEMBL | I1L0G6 | 0.0 | I1L0G6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G02990.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Representative plant | OGRP145 | 15 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G73360.1 | 1e-159 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.09G025800.1.p |
Entrez Gene | 100794552 |