PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G019300.2.p | ||||||||
Common Name | GLYMA_09G019300, LOC100814986 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 673aa MW: 77606.8 Da PI: 7.5455 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 64.8 | 2.3e-20 | 62 | 145 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y YAkevGF+vr+++s +++++e + + ++Cs +g+++ + + + r+etrtgC a++++++ ++++w+v ++ leHnH l Glyma.09G019300.2.p 62 NYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKVVN-----HLRKETRTGCPAMIRMRLVESQRWRVLEVTLEHNHML 145 5899***************************************9988.....999********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.6E-17 | 62 | 145 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.1E-31 | 264 | 357 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 1.6E-4 | 540 | 583 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 9.644 | 551 | 587 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.1E-6 | 562 | 589 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 673 aa Download sequence Send to blast |
MEESSLCCEQ LPDGECIEVV QKDKEDDTLI ELDCQNGFPE GRKEFVAPAV GMEFESYDDA 60 YNYYICYAKE VGFRVRVKNS WFKRNSREKY GAVLCCSSQG FKRIKVVNHL RKETRTGCPA 120 MIRMRLVESQ RWRVLEVTLE HNHMLGAKIL RSVKKMGNGT KRKPLPCSEA EGQTVKLYRA 180 LVIDAGGNGN SNCGAIEDRT FSESSNKLNL RKGDTQAIYN FLCRMQLTIP NFFYLMDFND 240 DGHLRNAFWV DARSRASCGY FGDVIYFDNT YLSNKFEIPL VTFVGINHHG QSVLLGCGLL 300 ASETTESYLW LLRTWLKCMS GCSPQTIITD RCKALQSAIV EVFPKSHHCF GLSLIMKKVP 360 EKLGGLHNYD AIRKALIKAV YETLKVIEFE AAWGFMIQRF GVSDHEWLRS LYEDRVRWAP 420 VYLKDIFFAG MSAARPGESI NPFFDRYVHK QTPLKEFLDK YELALHKKHK EESFSDIESR 480 SSSPLLKTRC SFELQLSRMY TREMFMKFQL EVEEVYSCFG TTQLHVDGPI IIFLVKERVL 540 IEGNRREIRD FEVLYSRTAG EVRCICSCFN FYGYLCRHAL CVLNFNGVEE IPHKYILSRW 600 KKDYKHPNHS SGGANDTDCT NDTDRIQWSN QLFRSALQVV EEGILSLDHY NVALQSLEES 660 LSKVHDVERR QE* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269|PubMed:15591448}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G019300.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003535036.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_006586816.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Swissprot | Q9SSQ4 | 0.0 | FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | I1L0A1 | 0.0 | I1L0A1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G02250.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 0.0 | FAR1-related sequence 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G019300.2.p |
Entrez Gene | 100814986 |
Publications ? help Back to Top | |||
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