PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.09G019300.2.p

Common Name

GLYMA_09G019300, LOC100814986

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

FAR1

Protein Properties

Length: 673aa MW: 77606.8 Da PI: 7.5455

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G019300.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64.8	2.3e-20	62	145	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Y YAkevGF+vr+++s +++++e + + ++Cs +g+++ + + + r+etrtgC a++++++ ++++w+v ++ leHnH l Glyma.09G019300.2.p 62 NYYICYAKEVGFRVRVKNSWFKRNSREKYGAVLCCSSQGFKRIKVVN-----HLRKETRTGCPAMIRMRLVESQRWRVLEVTLEHNHML 145 5899*************************************9988.....999******************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-17	62	145	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.1E-31	264	357	IPR018289	MULE transposase domain
Pfam	PF04434	1.6E-4	540	583	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	9.644	551	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.1E-6	562	589	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence Send to blast
MEESSLCCEQ LPDGECIEVV QKDKEDDTLI ELDCQNGFPE GRKEFVAPAV GMEFESYDDA 60 YNYYICYAKE VGFRVRVKNS WFKRNSREKY GAVLCCSSQG FKRIKVVNHL RKETRTGCPA 120 MIRMRLVESQ RWRVLEVTLE HNHMLGAKIL RSVKKMGNGT KRKPLPCSEA EGQTVKLYRA 180 LVIDAGGNGN SNCGAIEDRT FSESSNKLNL RKGDTQAIYN FLCRMQLTIP NFFYLMDFND 240 DGHLRNAFWV DARSRASCGY FGDVIYFDNT YLSNKFEIPL VTFVGINHHG QSVLLGCGLL 300 ASETTESYLW LLRTWLKCMS GCSPQTIITD RCKALQSAIV EVFPKSHHCF GLSLIMKKVP 360 EKLGGLHNYD AIRKALIKAV YETLKVIEFE AAWGFMIQRF GVSDHEWLRS LYEDRVRWAP 420 VYLKDIFFAG MSAARPGESI NPFFDRYVHK QTPLKEFLDK YELALHKKHK EESFSDIESR 480 SSSPLLKTRC SFELQLSRMY TREMFMKFQL EVEEVYSCFG TTQLHVDGPI IIFLVKERVL 540 IEGNRREIRD FEVLYSRTAG EVRCICSCFN FYGYLCRHAL CVLNFNGVEE IPHKYILSRW 600 KKDYKHPNHS SGGANDTDCT NDTDRIQWSN QLFRSALQVV EEGILSLDHY NVALQSLEES 660 LSKVHDVERR QE*

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence Send to blast

MEESSLCCEQ LPDGECIEVV QKDKEDDTLI ELDCQNGFPE GRKEFVAPAV GMEFESYDDA  60
YNYYICYAKE VGFRVRVKNS WFKRNSREKY GAVLCCSSQG FKRIKVVNHL RKETRTGCPA  120
MIRMRLVESQ RWRVLEVTLE HNHMLGAKIL RSVKKMGNGT KRKPLPCSEA EGQTVKLYRA  180
LVIDAGGNGN SNCGAIEDRT FSESSNKLNL RKGDTQAIYN FLCRMQLTIP NFFYLMDFND  240
DGHLRNAFWV DARSRASCGY FGDVIYFDNT YLSNKFEIPL VTFVGINHHG QSVLLGCGLL  300
ASETTESYLW LLRTWLKCMS GCSPQTIITD RCKALQSAIV EVFPKSHHCF GLSLIMKKVP  360
EKLGGLHNYD AIRKALIKAV YETLKVIEFE AAWGFMIQRF GVSDHEWLRS LYEDRVRWAP  420
VYLKDIFFAG MSAARPGESI NPFFDRYVHK QTPLKEFLDK YELALHKKHK EESFSDIESR  480
SSSPLLKTRC SFELQLSRMY TREMFMKFQL EVEEVYSCFG TTQLHVDGPI IIFLVKERVL  540
IEGNRREIRD FEVLYSRTAG EVRCICSCFN FYGYLCRHAL CVLNFNGVEE IPHKYILSRW  600
KKDYKHPNHS SGGANDTDCT NDTDRIQWSN QLFRSALQVV EEGILSLDHY NVALQSLEES  660
LSKVHDVERR QE*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development. May have a role in controlling flowering time. {ECO:0000269\|PubMed:15591448}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G019300.2.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015038	0.0	AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003535036.1	0.0	protein FAR1-RELATED SEQUENCE 6
Refseq	XP_006586816.1	0.0	protein FAR1-RELATED SEQUENCE 6
Swissprot	Q9SSQ4	0.0	FRS6_ARATH; Protein FAR1-RELATED SEQUENCE 6
TrEMBL	I1L0A1	0.0	I1L0A1_SOYBN; Uncharacterized protein
STRING	GLYMA09G02250.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	0.0	FAR1-related sequence 6

Link Out ? help Back to Top
Phytozome	Glyma.09G019300.2.p
Entrez Gene	100814986

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]