PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.09G012900.2.p | ||||||||
Common Name | GLYMA_09G012900, LOC100817107 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 692aa MW: 79694.5 Da PI: 6.1022 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 67.9 | 2.5e-21 | 68 | 159 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnH 87 ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++ +kk + +++r r++ r+gC+ak+ ++ke ++w v ++++ HnH Glyma.09G012900.2.p 68 EYYGNFARKNGFSIRKERSRISPQLG-IYKRDFVCYRSGFAPVKKKPNGEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNVHNH 156 59********************8888.********************9**********************99877789************ PP FAR1 88 ela 90 el Glyma.09G012900.2.p 157 ELL 159 *96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.7E-19 | 68 | 159 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.0E-17 | 291 | 382 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.101 | 563 | 598 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 4.1E-7 | 571 | 594 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 9.7E-5 | 573 | 600 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 692 aa Download sequence Send to blast |
MASMPSKNIC IRRQQCPCGD WKCYITYEGD AEEGSAAPEL VKAEKASSGA MVTPYVGMVF 60 KSDDDAFEYY GNFARKNGFS IRKERSRISP QLGIYKRDFV CYRSGFAPVK KKPNGEHHRD 120 RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIHEADQER 180 ILLLSKAGFP IHRIVKMLEL EKGIQGGQLP FLERDVRNFV QNRKKVVQEN EALLSEKREN 240 DVLELLEACK AMKEADDDFV YDFTVDANDK VENVAWSYSD SVNANAMFGD VVYFDSSHRS 300 VTYGLLFGVW FGIDSYGRTI FFGCVLLQDE TPQSFSWALQ TFVRFMRGRC PQTILTDLDP 360 GLRDAIRSEF PGTKHVIPHW NILYKVPCWF SPPLGSRYTE FKSEFDALFH IENTEEFEHQ 420 WRQMISLFEL GSDKHTDLLY SVRASWAQAY VRGYFLAQMA TIAYSKSIDA FLKGIFTAHT 480 CLRSFFEQVG ISASFQHQAH QETQYIHLKT CIPIEEHARS ILTPFAFNAL QQELLLAMQY 540 AASEMANGSY IVRHFKSMDG EWLVIWLAED DQIHCSCKEF ESSGILCRHA LRVLVIKNYF 600 QLPDKYFLGR WRRECSLLVD DDQNNLGIGE EWFQEYQSLA ETLFQESSIT KERSDYVRKE 660 LTKELTRLLN EVRNLPEADG VCMNTSVSPA N* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.37699 | 0.0 | cotyledon| seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.09G012900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003534740.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_006586777.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_028181155.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Refseq | XP_028181156.1 | 0.0 | putative protein FAR1-RELATED SEQUENCE 10 | ||||
Swissprot | Q9LKR4 | 0.0 | FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10 | ||||
TrEMBL | A0A445IVL3 | 0.0 | A0A445IVL3_GLYSO; Uncharacterized protein | ||||
TrEMBL | I1L023 | 0.0 | I1L023_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G01540.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 0.0 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.09G012900.2.p |
Entrez Gene | 100817107 |
Publications ? help Back to Top | |||
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