PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

TALE

Protein Properties

Length: 380aa MW: 42374.1 Da PI: 6.5437

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.09G007500.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.5e-09	303	341	17	55
HHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 17 elFeknrypsaeereeLAkklgLterqVkvWFqNrRake 55 + +k +yps++++ LA+++gL+++q+ +WF N+R ++ Glyma.09G007500.1.p 303 NRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 341 4445689*****************************885 PP
2	ELK	40.7	5.1e-14	261	282	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 +LK qLlrKYsgyLgsLkqEF+ Glyma.09G007500.1.p 261 DLKGQLLRKYSGYLGSLKQEFM 282 69*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	5.4E-20	122	166	IPR005540	KNOX1
Pfam	PF03790	2.1E-22	123	162	IPR005540	KNOX1
SMART	SM01256	1.2E-26	175	226	IPR005541	KNOX2
Pfam	PF03791	3.2E-21	178	225	IPR005541	KNOX2
PROSITE profile	PS51213	10.999	261	281	IPR005539	ELK domain
Pfam	PF03789	9.3E-11	261	282	IPR005539	ELK domain
SMART	SM01188	9.5E-8	261	282	IPR005539	ELK domain
PROSITE profile	PS50071	13.151	281	344	IPR001356	Homeobox domain
SMART	SM00389	4.6E-13	283	348	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.37E-19	283	359	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.5E-28	286	346	IPR009057	Homeodomain-like
CDD	cd00086	3.43E-13	293	345	No hit	No description
Pfam	PF05920	7.9E-17	301	340	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	319	342	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048440	Biological Process	carpel development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence Send to blast
MEGGSSSSNG TSYLLAFGEN NSGGLCPMTM MPLVTSHHAG HHPINPSNNN NVNTNCLFIP 60 NCSNSTGTPS IMLHNNHNNN KTDDDDNNNN TGLGYYFMES DHHHHHHGNN NNNGSSSSSS 120 SSAVKAKIMA HPHYHRLLAA YVNCQKVGAP PEVVARLEEA CASAATMAGG DAAAGSSCIG 180 EDPALDQFME AYCEMLTKYE QELSKPLKEA MLFLQRIECQ FKNLTISSSD FASNEGGDRN 240 GSSEEDVDLH NMIDPQAEDR DLKGQLLRKY SGYLGSLKQE FMKKRKKGKL PKEARQQLLE 300 WWNRHYKWPY PSESQKLALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF VVMDPSHPHY 360 YMDNVLGNPF PMDLSHPML*

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence Send to blast

MEGGSSSSNG TSYLLAFGEN NSGGLCPMTM MPLVTSHHAG HHPINPSNNN NVNTNCLFIP  60
NCSNSTGTPS IMLHNNHNNN KTDDDDNNNN TGLGYYFMES DHHHHHHGNN NNNGSSSSSS  120
SSAVKAKIMA HPHYHRLLAA YVNCQKVGAP PEVVARLEEA CASAATMAGG DAAAGSSCIG  180
EDPALDQFME AYCEMLTKYE QELSKPLKEA MLFLQRIECQ FKNLTISSSD FASNEGGDRN  240
GSSEEDVDLH NMIDPQAEDR DLKGQLLRKY SGYLGSLKQE FMKKRKKGKL PKEARQQLLE  300
WWNRHYKWPY PSESQKLALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF VVMDPSHPHY  360
YMDNVLGNPF PMDLSHPML*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	276	285	LKQEFMKKRK
2	282	286	KKRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.7714	0.0	flower\| meristem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	310568	0.0

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: First expressed in the embryo proliferation stage, increases during early somatic embryo development and decreases thereafter.
Uniprot	TISSUE SPECIFICITY: Expressed mainly in embryonic tissues. Weakly detected in stems and hypocotyl.

Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.09G007500.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	SOYHOMEOGE	0.0	L13663.1 Glycine max homeobox-containing (Sbh1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001238058.1	0.0	homeobox protein SBH1
Refseq	XP_028179759.1	0.0	homeobox protein SBH1 isoform X1
Swissprot	P46608	0.0	HSBH1_SOYBN; Homeobox protein SBH1
TrEMBL	A0A0R0I1R8	0.0	A0A0R0I1R8_SOYBN; Uncharacterized protein
TrEMBL	A0A445IV71	0.0	A0A445IV71_GLYSO; Homeobox protein SBH1 isoform A
STRING	GLYMA09G01000.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2039	34	80
Representative plant	OGRP167	17	148

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-131	KNOX/ELK homeobox transcription factor

Link Out ? help Back to Top
Phytozome	Glyma.09G007500.1.p
Entrez Gene	547796

Publications ? help Back to Top
Shu Y, et al. GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean. Plant Cell Rep., 2015. 34(11): p. 1927-37 [PMID:26205508] Ma H,McMullen MD,Finer JJ Identification of a homeobox-containing gene with enhanced expression during soybean (Glycine max L.) somatic embryo development. Plant Mol. Biol., 1994. 24(3): p. 465-73 [PMID:7907232]