PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G365100.1.p | ||||||||
Common Name | GLYMA_08G365100, LOC100812981 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | LBD | ||||||||
Protein Properties | Length: 297aa MW: 32277.5 Da PI: 8.0504 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 100.1 | 2e-31 | 4 | 107 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq 85 +C++C+vlr++C+++C ++p++ p++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ Glyma.08G365100.1.p 4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLVNAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSW 93 6***************************************************************************************** PP DUF260 86 qleqlkaelallke 99 ql+q+++e +l ++ Glyma.08G365100.1.p 94 QLCQAAVENVLKGA 107 ******99988765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 3.9E-98 | 1 | 296 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 16.889 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.7E-25 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLVNAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV ENVLKGAPIT PITSEAAASG 120 RCPPLKAYDI RHVFKDENSA AASNETQHQR VKTRSRVKRP LAKPKSTANQ NNNINTKNTG 180 TEFGSDEPGL VACDWTEEAL NRSGSHDSTL SHQSEAANAV ESESILSAET SILFRDEPES 240 NPKRLDRTDD VGLELTLGFE PVSGAQHVVP VKKRRIDLKD FSGSSCKMEL GLECSA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.32587 | 0.0 | cotyledon| flower| hypocotyl| somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G365100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001341001.1 | 0.0 | LBD domain-containing transcription factor | ||||
Refseq | XP_028246542.1 | 0.0 | LOB domain-containing protein 41-like | ||||
Swissprot | Q9M886 | 1e-103 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A445JPZ7 | 0.0 | A0A445JPZ7_GLYSO; LOB domain-containing protein 41 | ||||
TrEMBL | K7LAX8 | 0.0 | K7LAX8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G48040.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 | Representative plant | OGRP403 | 16 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 1e-104 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G365100.1.p |
Entrez Gene | 100812981 |