PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G346300.1.p
Common NameGLYMA_08G346300, Glyma08g46040.1, LOC100812081
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 587aa    MW: 63804.8 Da    PI: 6.5095
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G346300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284e-09396443455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Glyma.08G346300.1.p 396 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 443
                          8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474598.24E-17390461IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.48E-10390447No hitNo description
Gene3DG3DSA:4.10.280.101.4E-16392460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663392442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-6396443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10398448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 587 aa     Download sequence    Send to blast
MENQFFLNAG VPPQLHFEPS PHHHHHHLCP PPSWQSSLSS AMDVQVTVLN CSTEQNPDCF  60
YNNTPTWDKS TDHHGLQFDS ALSSMVSSPA ASNSNMSSEN FVIRELIGKL GNIGAGSDEI  120
EISPHSQPLV GASSYINCNN NSTNTSCYST PLSSSPKVNM NKIPTMVKHL VKEGMPLSLG  180
TSTSLNSTVA EFSADPGFAE RAAKLSCFGS RSFNGRTTQL CLNIAELAQR SSPLVENGKK  240
QLPRVSSSPS LKVLGSQMGT QENKNSPLQD LMEVANSQEE SAISEQTPNG DTGEKPSPYV  300
NSRKRKGPSK GKAKETSTST NPPMAAEASD DSNAKRSKPN EGEGNENGQV KAEEESKGGN  360
NSNANDEKQN KSNSKPPEPP KDYIHVRARR GQATDSHSLA ERVRREKISE RMKLLQDLVP  420
GCNKVTGKAL MLDEIINYVQ SLQRQVEFLS MKLASVNTRL DFSIESLISK DIFQSNNSLA  480
QPIFPIDSSA PPFYGQQTQP NPAIHNNIPN GTMTHNSVDP LDTGMCQNLG MHLPHLNGFN  540
EGGFQYPITF SEDDLHTIVQ MGFGQTANRK TPIQSQSFNG SNQEPL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.215870.0epicotyl| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G346300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311130.0KT031113.1 Glycine max clone HN_CCL_101 bHLH transcription factor (Glyma08g46040.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532257.10.0transcription factor bHLH62
RefseqXP_028246340.10.0transcription factor bHLH62-like
TrEMBLA0A445JP180.0A0A445JP18_GLYSO; Transcription factor bHLH62 isoform A
TrEMBLI1KZ150.0I1KZ15_SOYBN; BHLH transcription factor
STRINGGLYMA08G46040.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.13e-93bHLH family protein
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]