PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G339200.1.p
Common NameGLYMA_08G339200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family B3
Protein Properties Length: 286aa    MW: 32870.2 Da    PI: 10.1521
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G339200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3665.4e-2126114599
                          -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                   B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                           +++d+l +g l+lp +f++++g  k+ s t+ l+ ++g +W+v+l  +k++gr+++++GWk+Fv+ + L  g  +vFk+dg  +f+++v
  Glyma.08G339200.1.p  26 IMHPDNLLQGKLRLPAEFVNKYG--KHLSNTMFLKLPNGAEWRVNL--EKRDGRVWFQEGWKKFVEHHSLAHGHLLVFKYDG--TFHFHV 109
                          468999999*************9..45999****************..*******************************987..67779* PP

                          EEE-S CS
                   B3  95 kvfrk 99 
                           +f+ 
  Glyma.08G339200.1.p 110 LIFDP 114
                          99986 PP
2B347.33.7e-15195282798
                          .-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS
                   B3   7 psdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 
                          +  +++++ ++lpk+ ++ +  g    +++ ++l     rsW+vkl + k++++++++++W  F+++n+LkegD + F+l ++ ++  ++
  Glyma.08G339200.1.p 195 K--SSSKQHMYLPKDSLKGYikG----GEQYVKLLV-GERSWRVKLVHYKNRSSCFFSANWPAFARENDLKEGDACWFQLLNSsDDIVMN 277
                          3..3344459*******988632....334566655.77****************************************88775777777 PP

                          EEEE- CS
                   B3  94 vkvfr 98 
                          v++ r
  Glyma.08G339200.1.p 278 VTISR 282
                          77766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-2717115IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.51E-2718115IPR015300DNA-binding pseudobarrel domain
CDDcd100176.88E-2122113No hitNo description
PROSITE profilePS5086314.43822115IPR003340B3 DNA binding domain
SMARTSM010193.6E-2023115IPR003340B3 DNA binding domain
PfamPF023622.0E-1826113IPR003340B3 DNA binding domain
PROSITE profilePS5086311.392187284IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-15189282IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.94E-16189276IPR015300DNA-binding pseudobarrel domain
CDDcd100173.48E-12189282No hitNo description
SMARTSM010191.7E-9190284IPR003340B3 DNA binding domain
PfamPF023621.6E-13193282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MTSKLNHRDD GSNGDSASKP IHFLRIMHPD NLLQGKLRLP AEFVNKYGKH LSNTMFLKLP  60
NGAEWRVNLE KRDGRVWFQE GWKKFVEHHS LAHGHLLVFK YDGTFHFHVL IFDPSANEID  120
YPVNKANHKR VRISSEEIQP PTTCKTSGNK RSNSNLQDNA FHQKVRDHKG RYESPSEGKR  180
NMEAAGSISF TVRMKSSSKQ HMYLPKDSLK GYIKGGEQYV KLLVGERSWR VKLVHYKNRS  240
SCFFSANWPA FARENDLKEG DACWFQLLNS SDDIVMNVTI SREGH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G339200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028247196.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A445JP010.0A0A445JP01_GLYSO; B3 domain-containing transcription factor VRN1
TrEMBLI1KYP50.0I1KYP5_SOYBN; Uncharacterized protein
STRINGGLYMA08G44640.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Representative plantOGRP1718538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-35B3 family protein