PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G294000.1.p
Common NameGLYMA_08G294000, LOC100784478
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 274aa    MW: 29111.1 Da    PI: 7.0796
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G294000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.29.1e-11156203455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Glyma.08G294000.1.p 156 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 203
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000838.63E-11150207No hitNo description
SuperFamilySSF474599.95E-18150219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-18152221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828152202IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-8156203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10158208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048446Biological Processpetal morphogenesis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MDPGAMMNEG SFANNASGNT APFSLAEIWQ QFPPAISGGG GLGLRSPQFG HGPGGQFGDF  60
TTGPSHGLGP SNSRKRRDSE EDDSAKGVST SNAVNEGDGK RVKGNRNEGG GDGGNNKGEG  120
EVSSGKPAEQ SAKPASEPPK QDYIHVRARR GQATDSHSLA ERARREKISE RMKILQDLVP  180
GCNKVIGKAL VLDEIINYIQ SLQRQVEFLS MKLEAVNSRL NSGIEAFPPK DFGQQAFDPA  240
GIPFGSQAPR EYSRGSSPDW LHMQIGGSFE RTT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.251340.0flower| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00207DAPTransfer from AT1G59640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G294000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532044.10.0transcription factor BHLH089
RefseqXP_028245702.10.0transcription factor BHLH089
SwissprotQ84T083e-81BH089_ORYSJ; Transcription factor BHLH089
TrEMBLA0A445JLT90.0A0A445JLT9_GLYSO; Transcription factor BHLH089
TrEMBLK7L9P70.0K7L9P7_SOYBN; Uncharacterized protein
STRINGGLYMA08G40541.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF117134105
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.13e-93BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]