PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G290100.4.p
Common NameGLYMA_08G290100, LOC100820272
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 297aa    MW: 31577.1 Da    PI: 7.1698
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G290100.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.21.7e-121155345
                         SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                          W++e d+ + +a + ++ +   +W++Ia+ ++ g+tl+++k+++ 
  Glyma.08G290100.4.p 11 EWSKEQDKAFENALAIHPEDasdRWEKIAADVP-GKTLEEIKHHYE 55
                         7********************************.**********96 PP
2Myb_DNA-binding43.85.9e-14122166347
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          +WT++E+ l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  Glyma.08G290100.4.p 122 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                          6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.573762IPR017884SANT domain
SMARTSM007172.2E-10860IPR001005SANT/Myb domain
SuperFamilySSF466892.35E-111066IPR009057Homeodomain-like
CDDcd001672.83E-101158No hitNo description
Gene3DG3DSA:1.10.10.602.5E-51155IPR009057Homeodomain-like
PfamPF002491.0E-91155IPR001005SANT/Myb domain
PROSITE profilePS5129417.61114171IPR017930Myb domain
SuperFamilySSF466898.28E-17117172IPR009057Homeodomain-like
SMARTSM007174.5E-11119169IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.5E-17119169IPR006447Myb domain, plants
CDDcd001671.29E-10122167No hitNo description
Gene3DG3DSA:1.10.10.605.2E-11122165IPR009057Homeodomain-like
PfamPF002497.4E-12122166IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MTVDEVGSSS EWSKEQDKAF ENALAIHPED ASDRWEKIAA DVPGKTLEEI KHHYELLVED  60
VNQIESGCVP LPSYNSSPEG STSHASDEGA GKKGGHSWNS NNESNHGTKA SRSDQERRKG  120
IAWTEDEHRL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS  180
SIHDITSVNN GDVSALQGPI TGQTNGSAAN CAGKSTKPPP PTPTAAPGVG IYAAPTIGQP  240
IGGPLVSAVG TPVMNLPPPA HIAYGLGAPV PRAVVAGAPM NLGPVPYPMS HTSAHR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-20777676RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.608890.0somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young seedlings, developing leaves, sepals and trichomes. {ECO:0000269|PubMed:26243618}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G290100.4.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0966930.0BT096693.1 Soybean clone JCVI-FLGm-25B10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532025.10.0transcription factor SRM1
RefseqXP_006585964.10.0transcription factor SRM1
RefseqXP_025985536.10.0transcription factor SRM1
RefseqXP_025985537.10.0transcription factor SRM1
SwissprotQ9FNN61e-123SRM1_ARATH; Transcription factor SRM1
TrEMBLK7L9L30.0K7L9L3_SOYBN; Uncharacterized protein
STRINGGLYMA08G40020.50.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-116MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]