PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G286500.1.p
Common NameGLYMA_08G286500, LOC100807261
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 497aa    MW: 55648.3 Da    PI: 7.5286
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G286500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.63.9e-12297340755
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            Er+RR++i++++++Lr+l+P       +K++ a+iL  Av++Ik+Lq
  Glyma.08G286500.1.p 297 VTERNRRNKIKKGLFTLRSLVPRI-----TKMDRAAILADAVDHIKELQ 340
                          57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.0E-159151IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000833.58E-12288344No hitNo description
PROSITE profilePS5088814.195290339IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-15294356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-14296345IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-10297340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.4E-16297356IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 497 aa     Download sequence    Send to blast
MSGLGVVECL RPLVKTNAWD YVVVWKYGDD PTRFIEWVGC CCRGSCSVNI DVVKPEEEKG  60
EVCNLAQSCR DDHFHFQHLV RTKACEALAQ LPFALSLYSG VHGEVAISQQ ARWLTQDSIG  120
TQVLIPIVGG LIELFTENLI PMDMNIIEFI TAHGCVSLEQ EAISAQSYTS LNINEHLPLR  180
EQYSHWSPHM PTLTPSVHQP ATRQCSSHPS IEGPSSGSNP STEEPSFDSK FASLIPHEYL  240
KPPVKKSPIP KTETPKYNKT SGKWQRGLSS HCSNEEDDES KSVKESQKEV YQAKNLVTER  300
NRRNKIKKGL FTLRSLVPRI TKMDRAAILA DAVDHIKELQ TQVRELKDEV RDLEEQECEK  360
NTPQLMITKG KKPEGTRSNP PLNQSSSGCT KKMQMEVQVE VHHISKTDFL IKLCSEQTQG  420
GFSKLMEAIH SIGLKVDSAN MTTLDGKVLN ILTAKANKQD IHPTKLKEYL IQKTSDDRQS  480
SKQVRENGGD MKSSRK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300307NRRNKIKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G286500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150341e-155AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003530643.10.0transcription factor bHLH90 isoform X2
TrEMBLK7L9I60.0K7L9I6_SOYBN; Uncharacterized protein
STRINGGLYMA08G39470.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122653033
Representative plantOGRP37041323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10610.14e-38bHLH family protein