PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G281200.1.p
Common NameGLYMA_08G281200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 262aa    MW: 28932.9 Da    PI: 7.3537
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G281200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer84.99e-2766120459
          ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                           +Y+eClkNh +s+G h +DGC Ef+p  g+egt +alkC  C+CHRnFHR+e+++
  Glyma.08G281200.1.p  66 GKYQECLKNHGVSIGKHIIDGCIEFLPG-GQEGTLEALKCVVCNCHRNFHRKETHD 120
                          58*************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257748.0E-1856118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.7E-2467117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047705.2E-2667118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.63868117IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466893.72E-20184259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-32188260IPR009057Homeodomain-like
TIGRFAMsTIGR015658.4E-27198254IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MEFQKHHEEA ELGLPIAVAA TSYEEFGMPL NHGEQEPVVE VIPMAVPMAV PVAPPTNIVA  60
QNSGKGKYQE CLKNHGVSIG KHIIDGCIEF LPGGQEGTLE ALKCVVCNCH RNFHRKETHD  120
TYSVPFHHHH PPLPPPVPFA AYYRTPPGYP HMTGHQRAML AHPSLSGGGG PQPPLEDLED  180
SDPTSGATTH DGSGSSSKKR FRTKFTQHQK DKMLVFAEKL GWRMQKNDDS VVQEFCSEIG  240
VQRHVLKVWM HNNKHTLGKK P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-261972561675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G281200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2354070.0AC235407.1 Glycine max strain Williams 82 clone GM_WBb0125K21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014634789.10.0zinc-finger homeodomain protein 2
SwissprotQ6YXH59e-63ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBLI1KX970.0I1KX97_SOYBN; Uncharacterized protein
STRINGGLYMA08G38500.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.17e-59homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]