PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.08G276300.1.p

Common Name

GLYMA_08G276300, LOC102660774

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 404aa MW: 43341.4 Da PI: 8.277

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G276300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	1.9e-39	33	92	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +e+ +kcprCds+ntkfCyynnysl+qPr+fCk+CrryWt+GGalrnvP+Ggg+rknk++ Glyma.08G276300.1.p 33 PEQGVKCPRCDSSNTKFCYYNNYSLTQPRHFCKTCRRYWTNGGALRNVPIGGGCRKNKRV 92 67899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	31	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.0E-33	35	91	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.366	37	91	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	39	75	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MATAPATKDQ EPTQGRKFTT TTTTTTTTTR PAPEQGVKCP RCDSSNTKFC YYNNYSLTQP 60 RHFCKTCRRY WTNGGALRNV PIGGGCRKNK RVVVKPSSSS SSSLSSSPRF SNEFSLRGLN 120 VPPSVEFNLG ALPFPASSRL NIPTTLNTGL FSNQFSSSPL SFGGDVNSVS VTNNALSGFQ 180 LDATPATVLS NSLMSLASNN NTQNNNNFWA LQDRSQGSTL LLSDSFNSSA MQSMQQSLNV 240 HSSLASSIES LSCVNQDLHL KMQQQRYATM MFGGDSYHHK GGGGGGGDEN NGVSFSQTAN 300 RFENQKQLVG NPVMFQNLEI SKPPGSSVTE DPSGATVTTT VAPPTEWFFG NSSFSSAGNG 360 NDGANSNNNN INININDANN NWSDALAWGD FQQQQQQQYS ALP*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MATAPATKDQ EPTQGRKFTT TTTTTTTTTR PAPEQGVKCP RCDSSNTKFC YYNNYSLTQP  60
RHFCKTCRRY WTNGGALRNV PIGGGCRKNK RVVVKPSSSS SSSLSSSPRF SNEFSLRGLN  120
VPPSVEFNLG ALPFPASSRL NIPTTLNTGL FSNQFSSSPL SFGGDVNSVS VTNNALSGFQ  180
LDATPATVLS NSLMSLASNN NTQNNNNFWA LQDRSQGSTL LLSDSFNSSA MQSMQQSLNV  240
HSSLASSIES LSCVNQDLHL KMQQQRYATM MFGGDSYHHK GGGGGGGDEN NGVSFSQTAN  300
RFENQKQLVG NPVMFQNLEI SKPPGSSVTE DPSGATVTTT VAPPTEWFFG NSSFSSAGNG  360
NDGANSNNNN INININDANN NWSDALAWGD FQQQQQQQYS ALP*

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	22927303	0.0

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G276300.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006586514.1	0.0	dof zinc finger protein DOF5.7
Refseq	XP_028246795.1	0.0	dof zinc finger protein DOF5.7-like
TrEMBL	A0A0B2QWH1	0.0	A0A0B2QWH1_GLYSO; Dof zinc finger protein DOF5.7
TrEMBL	I1KX56	0.0	I1KX56_SOYBN; Uncharacterized protein
STRING	GLYMA08G37530.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3854	34	60
Representative plant	OGRP38	17	445

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55370.1	1e-33	OBF-binding protein 3

Link Out ? help Back to Top
Phytozome	Glyma.08G276300.1.p
Entrez Gene	102660774