PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G271000.1.p
Common NameGLYMA_08G271000, LOC100784115
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 304aa    MW: 34400 Da    PI: 7.9183
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G271000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13100151155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r +h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i+  A+e++k+L+
  Glyma.08G271000.1.p 100 QRITHITVERNRRKQMNEHLAVLRSLMPES---YVQRGDQASIVGGAIEFVKELE 151
                          799***************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.0E-1398154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.26E-1298155No hitNo description
SuperFamilySSF474593.66E-1698168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.58999150IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.2E-10100151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-9105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MTLETLQSNE FSNFIIYDTI SATPFSSHGS PEASFLESFV NYQEQHDHPT FDNCAMRTRK  60
REASEPESIG RRQNSVAVQG RKKRRRKPRV CKNTEEAETQ RITHITVERN RRKQMNEHLA  120
VLRSLMPESY VQRGDQASIV GGAIEFVKEL EHLLQSLEAR KLQLLHQEVA QTNENTAISK  180
LMQPPFAHCF SYPQYTWSQT PNKYTSKTKA AIADIEVTLI ETHANLRILT RRSSHGQLTK  240
LVAGFQTLCL TVLHLNVTTI DPLVFYSFSA KVEEGFQLGS VDGIATAVHH LLARIEEEAS  300
LCC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18086RKKRRRK
28087RKKRRRKP
38186KKRRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.387510.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G271000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0943130.0BT094313.1 Soybean clone JCVI-FLGm-24B24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014634765.10.0transcription factor bHLH71 isoform X1
RefseqXP_014634766.10.0transcription factor bHLH71 isoform X1
RefseqXP_028245443.10.0transcription factor bHLH71-like isoform X1
SwissprotQ9C7T43e-66BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A445JKV20.0A0A445JKV2_GLYSO; Transcription factor bHLH96
TrEMBLI1KX210.0I1KX21_SOYBN; Uncharacterized protein
STRINGGLYMA08G36590.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106443138
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.17e-69bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]