PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G265600.4.p
Common NameGLYMA_08G265600, LOC100101912
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 349aa    MW: 37196.8 Da    PI: 6.807
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G265600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.93.9e-22239301163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L++e+++++ e+++l+se+
  Glyma.08G265600.4.p 239 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENATLRSEVSQIRSEYEQLRSEN 301
                          89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.0E-7127IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.2E-5466206No hitNo description
Gene3DG3DSA:1.20.5.1705.2E-19233299No hitNo description
PfamPF001704.6E-21239301IPR004827Basic-leucine zipper domain
SMARTSM003386.4E-23239303IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.955241304IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.19E-11242299No hitNo description
CDDcd147021.99E-23244294No hitNo description
PROSITE patternPS000360246261IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MPPYGTPPHP YVAMYPHGGI YAHPSIPPGS YPFSPFAMAS PNGIADASGN APGRIEVGGK  60
PPEVKEKLPI KRSKGSASGG NLNMWITGKN NEPGKIPGES ANGIHSKSGE SASDGTSEGS  120
DENSQNDSQL KSRERQDSFE DEPSQNGSSV HAPQNGVHNR PQTVVNQTMS ILPISTTSAP  180
GAVPGPTTNL NIGMDYWGTP TSSTIPALHG KVPSTAVAGG MIAAGSRDGV QSQVWLQDER  240
ELKRQRRKQS NRESARRSRL RKQAECDELA QRAEALKEEN ATLRSEVSQI RSEYEQLRSE  300
NAALKERLGD IPGVATPGKE DLRSGQNDQH VSNDTQQSGQ TEVVQGVH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1255261RRSRLRK
2255262RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.291280.0cotyledon| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G265600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3697900.0AF369790.1 Phaseolus vulgaris bZIP transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585867.10.0bZIP transcription factor 16 isoform X3
RefseqXP_028245305.10.0bZIP transcription factor 16-like isoform X3
SwissprotQ501B21e-129BZP16_ARATH; bZIP transcription factor 16
TrEMBLK7L9280.0K7L928_SOYBN; Uncharacterized protein
STRINGGLYMA08G34280.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-132basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]