PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G257500.1.p
Common NameGLYMA_08G257500, LOC100804601
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Trihelix
Protein Properties Length: 327aa    MW: 36136.2 Da    PI: 5.0904
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G257500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.72.7e-2740132186
             trihelix   1 rWtkqevlaLiearremeerlrrgk.......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                          rWt+qe+l+Li+++++ e+r+r g+       + +p+W+ vs++++++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s + + +
  Glyma.08G257500.1.p  40 RWTRQEILVLIQGKSDAESRFRPGRgsgsafgSSEPKWALVSSYCKKHGVNREPVQCRKRWSNLAGDYKKIKEWESQVRDETESFWLMRN 129
                          8*********************8755677777*********************************************9999999998888 PP

             trihelix  84 qle 86 
                          +l+
  Glyma.08G257500.1.p 130 DLR 132
                          875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.82933104IPR017877Myb-like domain
CDDcd122037.79E-1539111No hitNo description
PfamPF138373.5E-1340127No hitNo description
Gene3DG3DSA:1.10.10.602.5E-540103IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
MALDQLSNPN AVDGAGNGAT PCSAVDGGIE DGRPAARLPR WTRQEILVLI QGKSDAESRF  60
RPGRGSGSAF GSSEPKWALV SSYCKKHGVN REPVQCRKRW SNLAGDYKKI KEWESQVRDE  120
TESFWLMRND LRRERKLPGY FDREVYNILD SPSSTAAAAA AETPVPVATV EEEVHLYDSN  180
RRVGSEDGLF SDSEKDEVLL LATTKDVPAP VPISEKQYQP HLQGCEGEGN PQGTTNEKRA  240
NPNPEMGSTS QGERKRKWLA TDGEEETLQS QLIDVLEKNG KMLRDQLEAQ KLNFQLDRQQ  300
QKDTASNIVA VLDKLADALG RIADKL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.610150.0somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G257500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531912.10.0trihelix transcription factor ASR3
SwissprotQ8VZ205e-96ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLI1KWR20.0I1KWR2_SOYBN; Uncharacterized protein
STRINGGLYMA08G28880.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21653375
Representative plantOGRP17471336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.12e-95Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]