 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Glyma.08G255200.1.p |
| Common Name | COL2a, CONSTANS, GLYMA_08G255200 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
CO-like |
| Protein Properties |
Length: 349aa MW: 38473.8 Da PI: 6.3169 |
| Description |
CO-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.08G255200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 20.4 | 1e-06 | 13 | 52 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg...Htvv 40
r+C+++ + + + fC+ +lC++C H + H++v
Glyma.08G255200.1.p 13 RMCDTCRSAPSSVFCRAHTAFLCATCDARLHASltwHERV 52
68*****************************888888865 PP
|
| 2 | zf-B_box | 28.7 | 2.7e-09 | 52 | 97 | 3 | 42 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
++C+ +e+ ++ + C+ + lC++C +H H +vp+
Glyma.08G255200.1.p 52 VWVCEACERAPAAFLCKADAASLCASCDADIHAAnplasrHHRVPI 97
689*****************************66889999777775 PP
|
| 3 | CCT | 70.5 | 4.2e-24 | 279 | 322 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
Glyma.08G255200.1.p 279 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 322
9*****************************************97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0009658 | Biological Process | chloroplast organization |
| GO:0009909 | Biological Process | regulation of flower development |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0048576 | Biological Process | positive regulation of short-day photoperiodism, flowering |
| GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering |
| GO:0005634 | Cellular Component | nucleus |
| GO:0005515 | Molecular Function | protein binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 349 aa
Download sequence Send
to blast |
MLDGEATMGT WARMCDTCRS APSSVFCRAH TAFLCATCDA RLHASLTWHE RVWVCEACER 60
APAAFLCKAD AASLCASCDA DIHAANPLAS RHHRVPILPI AAAPGNNDND NVDDADLDDD 120
DETASWLLLN PVKSASVPNN NNTNNGFSYN GEVDEYLDLV DDCDNHHFAS VATTTDHYSH 180
QHQHFGVVSH KSYAGDSVVP VQHHQHFQLG LEFDNSKAAF SYNASVNQSV SVSSMDIGVV 240
PESPMRDVSI GHTRTPKGTI DLFSGPPIQV PSHFSPMDRE ARVLRYREKK KTRKFEKTIR 300
YASRKAYAET RPRIKGRFAK RTDVEAEVDQ MFSTTLITEV GYGIVPSF*
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed throughout development. |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in leaves. Expressed at lower levels in stems, flowers and siliques. Not detected in roots. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Putative transcription factor. Does not affect flowering time. |
| Function -- GeneRIF ? help
Back to Top |
- GmCOL1a/b genes may serve as suppressors in photoperiodic flowering in soybean under long day conditions.[COL1a]
[PMID: 26508522]
|
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Expressed with a circadian rhythm showing a peak at dawn. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | DQ371243 | 0.0 | DQ371243.1 Glycine max CONSTANS-like 2a (COL2a) mRNA, complete cds. |
