PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G252800.1.p
Common NameGLYMA_08G252800, LOC100791730
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 340aa    MW: 38129 Da    PI: 5.1359
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G252800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH56.26.3e-184493255
                         HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         r +h+e E+rRR++iN++f+ Lr+l+P++    ++K +Ka+ L +++eYI+ Lq
  Glyma.08G252800.1.p 44 RSKHSETEQRRRSKINERFQVLRDLIPQN----DQKRDKASFLLEVIEYIQFLQ 93
                         899*************************9....9*******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088817.3844292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.6E-2442116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.66E-2043121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-154493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.10E-164497No hitNo description
SMARTSM003535.6E-134898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MARSAKGHQD EFDEDDEEEL LTGNISSKVK VDEPSTGKRV NPHRSKHSET EQRRRSKINE  60
RFQVLRDLIP QNDQKRDKAS FLLEVIEYIQ FLQEKIQIYE QTYEGWNQEP TKLTPWRNHH  120
GPAENTTDPS QASQNGSVDE KNNNVSPLLP KNVQNLIESD FSMTTIQKDH TPGSTTEAVP  180
LPMQMRLDMF DPIVSSGMAT QHLQEPVSNV NMPSHTQPQL WLNKQSKGNY IVPHNDTMKE  240
QEELVIESGS DSISSAYSQG ILDSLTQALH SSGVDMSQTN VSVQIDVGRR ANSGLIPSAY  300
TSKGHENQFV SNPAIARSGV DYCNIDSEQS SKRLRQEAS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.573010.0cotyledon| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G252800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0981320.0BT098132.1 Soybean clone JCVI-FLGm-12G7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531887.10.0transcription factor BIM3
RefseqXP_028245079.10.0transcription factor BIM3-like
TrEMBLA0A445JJX20.0A0A445JJX2_GLYSO; Transcription factor BIM2 isoform A
TrEMBLI1KWL00.0I1KWL0_SOYBN; Uncharacterized protein
STRINGGLYMA08G28010.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17303382
Representative plantOGRP13601747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69010.13e-61BES1-interacting Myc-like protein 2