PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G250800.2.p
Common NameGLYMA_08G250800, LOC100786580
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 236aa    MW: 26521.3 Da    PI: 9.9935
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G250800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.41.8e-28959151
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                         krienk+ +qvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
  Glyma.08G250800.2.p  9 KRIENKTSQQVTFSKRRSGLLKKANEISVLCDAQVALIMFSTKGKLFEYSS 59
                         79***********************************************96 PP
2K-box83.16.1e-2882161988
                K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 
                          ++++ + +++ e+ kL +++e L r+ R++lG+dL++LslkeLq+LeqqL+++lk+iR++Kn+++ e+i++l k++ke  
  Glyma.08G250800.2.p  82 NNNESQGNWSFEYIKLTAKVEVLDRNVRNFLGNDLDPLSLKELQSLEQQLDTALKRIRTRKNQVMNESISDLHKRMKEKA 161
                          55666889******************************************************************999865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.922161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-37160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.44E-31284IPR002100Transcription factor, MADS-box
CDDcd002652.19E-39275No hitNo description
PRINTSPR004043.0E-29323IPR002100Transcription factor, MADS-box
PfamPF003192.6E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-292338IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-293859IPR002100Transcription factor, MADS-box
PfamPF014868.8E-2484159IPR002487Transcription factor, K-box
PROSITE profilePS5129711.9887175IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGRGRVQLKR IENKTSQQVT FSKRRSGLLK KANEISVLCD AQVALIMFST KGKLFEYSSE  60
RSMEDVLERY ERYTHTALTG ANNNESQGNW SFEYIKLTAK VEVLDRNVRN FLGNDLDPLS  120
LKELQSLEQQ LDTALKRIRT RKNQVMNESI SDLHKRMKEK AKTVTEGPHT GPETLGPNSS  180
TLNLTSPQLP PPPQRLVPSL TLCETFQGRA LVEETGKAQT VPSGNSLIPP WMLHI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A2e-19174173MEF2 CHIMERA
6byy_B2e-19174173MEF2 CHIMERA
6byy_C2e-19174173MEF2 CHIMERA
6byy_D2e-19174173MEF2 CHIMERA
6bz1_A2e-19174173MEF2 CHIMERA
6bz1_B2e-19174173MEF2 CHIMERA
6bz1_C2e-19174173MEF2 CHIMERA
6bz1_D2e-19174173MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in tendrils and flowers. {ECO:0000269|PubMed:15247405}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G250800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0985710.0BT098571.1 Soybean clone JCVI-FLGm-16N7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001241037.11e-174uncharacterized protein LOC100786580
RefseqXP_028245054.11e-174truncated transcription factor CAULIFLOWER A-like isoform X2
SwissprotD7SMN61e-82FULL_VITVI; Agamous-like MADS-box protein FUL-L
TrEMBLC6TLI41e-173C6TLI4_SOYBN; Uncharacterized protein
STRINGGLYMA08G27680.11e-161(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60910.12e-62AGAMOUS-like 8
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]