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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G250600.2.p | ||||||||
Common Name | GLYMA_08G250600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 197aa MW: 23383 Da PI: 7.5907 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.9 | 2.7e-09 | 8 | 31 | 23 | 47 |
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W+tIa+++ gRt++++k++w+++ Glyma.08G250600.2.p 8 RWSTIAKYLS-GRTDNEIKNYWRTH 31 6*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.297 | 1 | 36 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.28E-7 | 7 | 35 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 9.2E-7 | 7 | 31 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-10 | 8 | 31 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.95E-6 | 8 | 32 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence Send to blast |
MRITKTCRWS TIAKYLSGRT DNEIKNYWRT HFGKRERSKH KKKLQRPKVK RVLKQLKHKQ 60 QQEQQPQEYD IKSIMSHEET VNETKSFETQ NCKQQEMGFM YPTTEHQYTV PNSLHEGFSS 120 TWQDSTLVDD DSWFSLWDFD EPQGFSDYVD QFSKCAMPNQ ATFRVGGDYS MQNDVKTSRF 180 DDAYDNDLFY GKDMFG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G250600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT099100 | 0.0 | BT099100.1 Soybean clone JCVI-FLGm-16H10 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001240937.1 | 1e-140 | uncharacterized protein LOC100785540 | ||||
Refseq | XP_028242568.1 | 1e-140 | transcription factor MYB57-like | ||||
TrEMBL | I1KWI6 | 1e-146 | I1KWI6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G27660.1 | 1e-139 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G30210.1 | 2e-11 | myb domain protein 121 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G250600.2.p |