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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.08G232700.1.p |
Common Name | GLYMA_08G232700, LOC100801417 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
C3H |
Protein Properties |
Length: 509aa MW: 55232.3 Da PI: 7.7376 |
Description |
C3H family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.08G232700.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-CCCH | 32.3 | 1.7e-10 | 146 | 171 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27
+++ C +++ t tCk+Gd+CkF H++
Glyma.08G232700.1.p 146 GEKDCAHYMLTRTCKFGDSCKFDHPF 171
7889********************95 PP
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2 | zf-CCCH | 34.8 | 2.9e-11 | 196 | 222 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27
++++ C++f++t Ck+G++CkF+H++
Glyma.08G232700.1.p 196 PGEPDCPYFLKTQRCKFGSKCKFNHPK 222
5789*********************96 PP
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3 | zf-CCCH | 38.8 | 1.6e-12 | 240 | 264 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C f+++tG C+yG+ CkF+H++
Glyma.08G232700.1.p 240 EPPCAFYMKTGKCRYGAACKFHHPK 264
79*********************96 PP
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4 | zf-CCCH | 39.1 | 1.2e-12 | 317 | 340 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
++ C+f+++tG CkyG +C+++H+
Glyma.08G232700.1.p 317 EVDCPFYMKTGSCKYGVTCRYNHP 340
689********************9 PP
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5 | zf-CCCH | 39.3 | 1.1e-12 | 403 | 426 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
+ +C+f+++tG+Ck+G+rCk++H+
Glyma.08G232700.1.p 403 QIECDFYMKTGECKFGERCKYHHP 426
568********************8 PP
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6 | zf-CCCH | 40.6 | 4.2e-13 | 454 | 477 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27
++C+++++tGtCk+G++CkF H+p
Glyma.08G232700.1.p 454 VICPYYLKTGTCKFGATCKFDHPP 477
68********************96 PP
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Protein Features
? help Back to Top |
 |
Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00356 | 0.002 | 144 | 171 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.235 | 144 | 172 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.19E-5 | 144 | 171 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-8 | 146 | 171 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 9.3E-6 | 195 | 222 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.187 | 195 | 223 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-8 | 197 | 222 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 5.49E-5 | 200 | 221 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.0E-4 | 201 | 220 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-6 | 237 | 264 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.014 | 237 | 265 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.2E-10 | 240 | 264 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-6 | 241 | 265 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-5 | 242 | 263 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-6 | 314 | 341 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.051 | 314 | 342 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-10 | 317 | 340 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.62E-5 | 318 | 341 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-4 | 320 | 339 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.7E-6 | 400 | 427 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.413 | 400 | 428 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.35E-6 | 402 | 428 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.0E-10 | 404 | 426 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.0E-5 | 406 | 426 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.6E-8 | 450 | 477 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.286 | 450 | 478 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-10 | 454 | 477 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.09E-5 | 454 | 477 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.0E-6 | 455 | 475 | IPR000571 | Zinc finger, CCCH-type |
Sequence ? help Back to Top |
Protein Sequence Length: 509 aa
Download sequence Send
to blast |
MENHIYASSY SPSTNYRSFR DHPAADAMFL SHHLHHRTDA SDAAAFRFPS SALSAVEAAD 60 IAPPGVTSRI ASSAASANFL SSWPPVAAAA AVPSALDLKR SSDALYHPTI LGTIGQSEAW 120 YSTNPLAKRP RYESASNMTI YPQRPGEKDC AHYMLTRTCK FGDSCKFDHP FWVPEGGIPD 180 WKEVPIVTSE TPPERPGEPD CPYFLKTQRC KFGSKCKFNH PKVSSENADV SSGLPERPSE 240 PPCAFYMKTG KCRYGAACKF HHPKDIQIQL SNDSSQTVAQ TQTNSIMGWA TGDTPPIQSL 300 ISPSLQNSKG LPVRLGEVDC PFYMKTGSCK YGVTCRYNHP DRNAINPPIA GLGASIFPSS 360 AANLNIGLLN PAVSVYQAFE PRLSNPMSQV GIADTIYPQR PGQIECDFYM KTGECKFGER 420 CKYHHPIDRS APSLSKQATV KLTPAGLPRR EGAVICPYYL KTGTCKFGAT CKFDHPPPGE 480 VMEMAKSQGT SANGGEAEGD EIETSAQL*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Highly expressed in inflorescences, at intermediate levels in leaves and stems and at lower levels in roots. {ECO:0000269|PubMed:11595801}. |
Functional Description ? help
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Source |
Description |
UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC235278 | 1e-120 | AC235278.1 Glycine max strain Williams 82 clone GM_WBb0048F23, complete sequence. |