PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.08G228900.2.p

Common Name

GLYMA_08G228900

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

Dof

Protein Properties

Length: 288aa MW: 32282.6 Da PI: 7.2486

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G228900.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.9	9.1e-38	73	131	3	61
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +k l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+g+rknk+s Glyma.08G228900.2.p 73 NKVLPCPRCNSSETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPLGAGKRKNKHS 131 67899****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-28	61	129	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.8E-31	74	130	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.416	76	130	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	78	114	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 288 aa Download sequence Send to blast
MNGLEESTND EVDVPLNEVS SKQIDPQEDG NSAPNIYKNP TLKLVAKVVN GNNEHRNAKR 60 DIDHQEKVLK RANKVLPCPR CNSSETKFCY FNNYNVNQPR HFCKNCQRYW TAGGTIRNVP 120 LGAGKRKNKH STLQYCLIPV TPDAASVSQT DSKPASDMLL SSSRLIKGME NISSLREETP 180 LSESLETVLS LNGQTNIEMA SSTLKDDAEE SSSSSMRSNE VEQGCLIHIR VLCQTGMNKR 240 KMLHWLDLHL VAYHCLHLQL ATVLVQVIGP QPWENILEME VHWGKMQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G228900.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006585698.1	1e-162	cyclic dof factor 3 isoform X1
TrEMBL	A0A0R0J0Q8	0.0	A0A0R0J0Q8_SOYBN; Uncharacterized protein
STRING	GLYMA08G24591.1	1e-161	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62430.1	1e-36	cycling DOF factor 1

Link Out ? help Back to Top
Phytozome	Glyma.08G228900.2.p