PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G228900.2.p | ||||||||
Common Name | GLYMA_08G228900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | Dof | ||||||||
Protein Properties | Length: 288aa MW: 32282.6 Da PI: 7.2486 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.9 | 9.1e-38 | 73 | 131 | 3 | 61 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +k l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvP+G+g+rknk+s Glyma.08G228900.2.p 73 NKVLPCPRCNSSETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPLGAGKRKNKHS 131 67899****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 7.0E-28 | 61 | 129 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.8E-31 | 74 | 130 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.416 | 76 | 130 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 78 | 114 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MNGLEESTND EVDVPLNEVS SKQIDPQEDG NSAPNIYKNP TLKLVAKVVN GNNEHRNAKR 60 DIDHQEKVLK RANKVLPCPR CNSSETKFCY FNNYNVNQPR HFCKNCQRYW TAGGTIRNVP 120 LGAGKRKNKH STLQYCLIPV TPDAASVSQT DSKPASDMLL SSSRLIKGME NISSLREETP 180 LSESLETVLS LNGQTNIEMA SSTLKDDAEE SSSSSMRSNE VEQGCLIHIR VLCQTGMNKR 240 KMLHWLDLHL VAYHCLHLQL ATVLVQVIGP QPWENILEME VHWGKMQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G228900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006585698.1 | 1e-162 | cyclic dof factor 3 isoform X1 | ||||
TrEMBL | A0A0R0J0Q8 | 0.0 | A0A0R0J0Q8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G24591.1 | 1e-161 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62430.1 | 1e-36 | cycling DOF factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G228900.2.p |