PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G227500.5.p | ||||||||
Common Name | GLYMA_08G227500, LOC100789242 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | FAR1 | ||||||||
Protein Properties | Length: 856aa MW: 97581 Da PI: 6.7178 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 50.4 | 7.5e-16 | 64 | 138 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +f+++YA++vGFs+ + + ++ k +g i++ +f Cs+e +++++ ++C+a+l+v+++ dg+w vtk++++HnH+la Glyma.08G227500.5.p 64 SFFDAYARHVGFSTHVGQFSRAKPDGPIITWDFACSREVFKRKNI--------------VSCNAMLRVERK-DGNWIVTKFVEDHNHSLA 138 59**************************************99865..............55*********9.****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.3E-13 | 64 | 138 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 8.0E-31 | 268 | 360 | IPR018289 | MULE transposase domain |
Pfam | PF04434 | 2.0E-11 | 533 | 579 | IPR007527 | Zinc finger, SWIM-type |
PROSITE profile | PS50966 | 11.338 | 545 | 581 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 5.6E-8 | 556 | 583 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 856 aa Download sequence Send to blast |
MDVEAVDEGE NSDRPASENV ETEKGQEQNM TVNLAEREVN NQNGDAYRKP QVGMLFESED 60 AAKSFFDAYA RHVGFSTHVG QFSRAKPDGP IITWDFACSR EVFKRKNIVS CNAMLRVERK 120 DGNWIVTKFV EDHNHSLASS RKVQNLQPGR HFVGAARNVT TETFDARNES YVSVNGNHLE 180 PIGSVRSSSL AEKCHPMRNI ESLTYARSSR KRTLGRDAQN LLNYFKKMQG ENPGFYYAIQ 240 LDDENRMTNV FWADARSRTA YNYFGDAVIF DTMYRPNQYQ VPFAPFTGFN HHGQMVIFGC 300 ALLLDESESS FTWLFKTWLS AMNDRPPVSI TTDQDRAIQA AVAHVFPETR HCICKWHILR 360 EGQERLAHIY LAHPSFYGDL YSCINFSETT EDFESTWKSL LDKYDLQKND WLQAVYNARK 420 QWAPVYFHDT FFAAITSNHG VSSFFDGYVN QQTTISLFFR QYERSLEHSL EKEIEADYET 480 VCNTPVLKTP SPMEQQAANM YTKKIFAKFQ EELVETFAYT ANNVEDDGVI SKYRVAKYEY 540 DHKAYMVTLN ISEMKANCSC QMFEYSGILC RHILTVFTVT NVLTLPSHYI LKRWTTNAKS 600 DIRTYEKITD PLDIENLTVR FNSLCREAIK LAEEGAIAVE TYNATMNALR EGAKRVGIMK 660 KNVAKVTPPN THGNGSCLED NSKKRPSSIS DVIPSLWPWQ DSVPHHFNLN DLGLPVTDLN 720 TPSMAPVSIH RDGGPLDNTV VLTCFKSMTW MIENKNSSSS SKIAVINMKL QDYGKGPLGE 780 TEVQFRVTRV TLEPMLRSMT YINQQLNAPV NRVAIINLRL QDTKTTTGQT EVKFQVSRDT 840 LGSMLRSMAY IQEQL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.38507 | 0.0 | meristem| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G227500.5.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003530369.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_014634675.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_014634676.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3 isoform X1 | ||||
Refseq | XP_028244784.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like isoform X1 | ||||
Refseq | XP_028244785.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like isoform X1 | ||||
Refseq | XP_028244786.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like isoform X1 | ||||
Refseq | XP_028244787.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like isoform X1 | ||||
Refseq | XP_028244788.1 | 0.0 | protein FAR1-RELATED SEQUENCE 3-like isoform X1 | ||||
Swissprot | Q9ZVC9 | 0.0 | FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3 | ||||
TrEMBL | A0A445JIP1 | 0.0 | A0A445JIP1_GLYSO; Protein FAR1-RELATED SEQUENCE 3 isoform A | ||||
TrEMBL | K7L884 | 0.0 | K7L884_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G24400.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G27110.2 | 0.0 | FAR1-related sequence 3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G227500.5.p |
Entrez Gene | 100789242 |
Publications ? help Back to Top | |||
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