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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G220800.2.p | ||||||||
Common Name | GLYMA_08G220800, LOC100819898 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 311aa MW: 35507.1 Da PI: 8.1814 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 40.1 | 8.9e-13 | 50 | 106 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n ++k+ + g ++ +e Aa+a++ a++k++g Glyma.08G220800.2.p 50 SIYRGVTRHRWTGRYEAHLWDkNCWNEsQSKKGRQGAYDDEEAAARAYDLAALKYWG 106 57*******************99998888888888********************98 PP | |||||||
2 | AP2 | 52.8 | 9.5e-17 | 149 | 200 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g Glyma.08G220800.2.p 149 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAAAYDMAAIEYRG 200 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.18E-15 | 50 | 116 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.0E-8 | 50 | 106 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.019 | 51 | 114 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-13 | 51 | 115 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-22 | 51 | 120 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-6 | 52 | 63 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.54E-15 | 149 | 210 | No hit | No description |
Pfam | PF00847 | 2.8E-12 | 149 | 200 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.15E-18 | 149 | 210 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.268 | 150 | 208 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-17 | 150 | 209 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.2E-24 | 150 | 214 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-6 | 190 | 210 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MRVQCSGPLS FLIFMAKKSQ KSLKNNNNNN TTRKRTRKSV PRDSPPQRSS IYRGVTRHRW 60 TGRYEAHLWD KNCWNESQSK KGRQGAYDDE EAAARAYDLA ALKYWGQDTI LNFPLSNYEE 120 KLKEMEGQSK EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV FGNKYLYLGT 180 YATQEEAAAA YDMAAIEYRG LNAVTNFDLS RYINWPRPKT EENHQNTPSN QNVNSNAELE 240 LGSASDEITE EGVARSSESE SNPSRRTFPE DIQTIFENNQ DSGIYIENDD IIFGDLGSFG 300 APIFHFELDV * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G220800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006585655.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
Refseq | XP_028245554.1 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 isoform X2 | ||||
Swissprot | Q94AN4 | 1e-118 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | I1KVP7 | 0.0 | I1KVP7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G23630.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 4e-99 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G220800.2.p |
Entrez Gene | 100819898 |
Publications ? help Back to Top | |||
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