PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G215600.1.p
Common NameGLYMA_08G215600, LOC100809956
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 376aa    MW: 41909.4 Da    PI: 8.2496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G215600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.71.1e-09190234554
                          HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                          h + Er+RR+++ ++f  L   +P +     kK +Ka+iL +A+ ++k L
  Glyma.08G215600.1.p 190 HIMTERKRRRELTERFIALSATIPGL-----KKIDKATILSEAITHVKRL 234
                          899***********************.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.884185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-15188260IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-7190234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-14190251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.24E-9190239No hitNo description
SMARTSM003532.5E-10191240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGEPCQKYWF SDMEIQDIDF FNQSHNHKIE SLDHDEDQIF REIMHQPVFS SDSDTHLPSK  60
IQSKSIHGGV SSGYNTYTVL ANNKSNNSNL AMKSNTSNFI FSSQLHAPPE KLPATASTSP  120
TAYILSFDDS TVVAATRQNY GEKQPYHQEV VLGSGGACLP SKGVSEGHDF EPKAKPTTKR  180
SRSSAETLVH IMTERKRRRE LTERFIALSA TIPGLKKIDK ATILSEAITH VKRLKERVRE  240
LEEQRKKTRV ESVSFVHQRS HIATVKGTTS GAMNSDECCR TNEALPTVEA RVFKKDVLLR  300
IHCKIQSGIL IKILDHLNSL DLSTISNSVM PFGSSTLDIS IIAQMGDNFN VTTMNDLVKN  360
LRMTLSQSSE VQVQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194198RKRRR
2234246KERVRELEEQRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G215600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-131AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585622.10.0transcription factor bHLH18
TrEMBLA0A0R0IQG90.0A0A0R0IQG9_SOYBN; Uncharacterized protein
STRINGGLYMA08G23062.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1625679
Representative plantOGRP6561573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.17e-28bHLH family protein