PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G202300.1.p
Common NameGLYMA_08G202300, Glyma08g21650.1, LOC100801780
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 252aa    MW: 27503.8 Da    PI: 4.6757
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G202300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2582.3e-1875126156
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                          + y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a++ ++ge
  Glyma.08G202300.1.p  75 PVYHGVRKRN-WGKWVSEIREPRK---KSRIWLGTFATPEMAARAHDVAALTIKGE 126
                          68*****887.**********843...6***********************99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.2E-1375126IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-2176133IPR016177DNA-binding domain
SMARTSM003802.5E-3376139IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3176134IPR001471AP2/ERF domain
PROSITE profilePS5103222.69576133IPR001471AP2/ERF domain
CDDcd000183.04E-3177134No hitNo description
PRINTSPR003671.4E-97788IPR001471AP2/ERF domain
PRINTSPR003671.4E-999115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MCLGLQETKN IPTILNFTHL QITMTQQATT SSETTTSSSS SSSSSSSTFS PSQHSGPKAQ  60
AQKQSKRPRD CSKHPVYHGV RKRNWGKWVS EIREPRKKSR IWLGTFATPE MAARAHDVAA  120
LTIKGESAIL NFPEIADLLP RPVTCAPRDI QAAATAAASM VKFDPVTQSS DSETPESSEL  180
SEIVELPNIE DSSFDSVDSR PEFVLVDVVD GWVFPPMGMG SEGIEICAAF SDELFPQQSF  240
VDEIEILPIW D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-18721381077Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.302670.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G202300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310810.0KT031081.1 Glycine max clone HN_CCL_165 AP2-EREBP transcription factor (Glyma08g21650.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003531655.30.0ethylene-responsive transcription factor ERF036
RefseqXP_028245389.10.0ethylene-responsive transcription factor ERF036-like
SwissprotQ9LYD35e-58DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A445JHD80.0A0A445JHD8_GLYSO; Dehydration-responsive element-binding protein 3
TrEMBLI1KV370.0I1KV37_SOYBN; AP2-EREBP transcription factor
STRINGGLYMA08G21650.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-59ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]
  3. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]