PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Glyma.08G197600.1.p

Common Name

GLYMA_08G197600, LOC100775192

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

bHLH

Protein Properties

Length: 444aa MW: 48935.3 Da PI: 5.4114

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.08G197600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.7	9.8e-09	349	389	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r RR+riN+++ L++l+P K++ a++L +A +Y+k L Glyma.08G197600.1.p 349 ARHRRERINEKIRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 389 599***************95.....5**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.364	340	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.96E-14	345	402	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.2E-13	346	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.23E-11	346	394	No hit	No description
SMART	SM00353	1.2E-13	346	395	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.4E-6	350	389	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MDGLSWDASQ LWSTIQQPPD FEGGYSMPPN VLNQIQEMQK AQTGHAYSNS ERGIYHSAGA 60 TTTSSEMMDV MQKQDTNLSQ HVSIMQVKPA GAGASWGETL TSQSYPSLSV NRPHSMNLIS 120 NYMPDFYMAH QQQQQQQQQQ QLESFDCLIS ATNSNTDITS VEDDDGISMI LSDCGNLWSN 180 FSYGSAASTG ESESNASNGR NKDMQCSPVN IEVDETVSQT VESEANCSKR SHAHDQSKMI 240 KVGDSCFSIV QNSSPIEEGG FRLVSDINQP ECKKSRWDMS SSSNNINFQQ PNSSISSSIE 300 EPDPEAIAQM KEMIYRAAAF RPVNFGLEVA EKPKRKNVKI STDPQTVAAR HRRERINEKI 360 RVLQKLVPGG SKMDTASMLD EAANYLKFLR SQVKALESLG NKVDAMNCPP TSIAFSFNPS 420 FPMQTPPLCH IHHSHGVKQN NPA*

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MDGLSWDASQ LWSTIQQPPD FEGGYSMPPN VLNQIQEMQK AQTGHAYSNS ERGIYHSAGA  60
TTTSSEMMDV MQKQDTNLSQ HVSIMQVKPA GAGASWGETL TSQSYPSLSV NRPHSMNLIS  120
NYMPDFYMAH QQQQQQQQQQ QLESFDCLIS ATNSNTDITS VEDDDGISMI LSDCGNLWSN  180
FSYGSAASTG ESESNASNGR NKDMQCSPVN IEVDETVSQT VESEANCSKR SHAHDQSKMI  240
KVGDSCFSIV QNSSPIEEGG FRLVSDINQP ECKKSRWDMS SSSNNINFQQ PNSSISSSIE  300
EPDPEAIAQM KEMIYRAAAF RPVNFGLEVA EKPKRKNVKI STDPQTVAAR HRRERINEKI  360
RVLQKLVPGG SKMDTASMLD EAANYLKFLR SQVKALESLG NKVDAMNCPP TSIAFSFNPS  420
FPMQTPPLCH IHHSHGVKQN NPA*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.08G197600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015042	0.0	AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003533026.1	0.0	transcription factor bHLH87
Refseq	XP_028244468.1	0.0	transcription factor bHLH87-like
Swissprot	Q8S3D2	2e-85	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A445JHB4	0.0	A0A445JHB4_GLYSO; Transcription factor bHLH87 isoform A
TrEMBL	K7L7Q6	0.0	K7L7Q6_SOYBN; Uncharacterized protein
STRING	GLYMA08G21130.2	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4530	32	57
Representative plant	OGRP10281	6	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	7e-81	bHLH family protein

Link Out ? help Back to Top
Phytozome	Glyma.08G197600.1.p
Entrez Gene	100775192

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]