PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G197600.1.p
Common NameGLYMA_08G197600, LOC100775192
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 444aa    MW: 48935.3 Da    PI: 5.4114
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G197600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.79.8e-09349389954
                          HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                  HLH   9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           r RR+riN+++  L++l+P        K++ a++L +A +Y+k L
  Glyma.08G197600.1.p 349 ARHRRERINEKIRVLQKLVPGG-----SKMDTASMLDEAANYLKFL 389
                          599*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.364340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-14345402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-13346398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.23E-11346394No hitNo description
SMARTSM003531.2E-13346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-6350389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MDGLSWDASQ LWSTIQQPPD FEGGYSMPPN VLNQIQEMQK AQTGHAYSNS ERGIYHSAGA  60
TTTSSEMMDV MQKQDTNLSQ HVSIMQVKPA GAGASWGETL TSQSYPSLSV NRPHSMNLIS  120
NYMPDFYMAH QQQQQQQQQQ QLESFDCLIS ATNSNTDITS VEDDDGISMI LSDCGNLWSN  180
FSYGSAASTG ESESNASNGR NKDMQCSPVN IEVDETVSQT VESEANCSKR SHAHDQSKMI  240
KVGDSCFSIV QNSSPIEEGG FRLVSDINQP ECKKSRWDMS SSSNNINFQQ PNSSISSSIE  300
EPDPEAIAQM KEMIYRAAAF RPVNFGLEVA EKPKRKNVKI STDPQTVAAR HRRERINEKI  360
RVLQKLVPGG SKMDTASMLD EAANYLKFLR SQVKALESLG NKVDAMNCPP TSIAFSFNPS  420
FPMQTPPLCH IHHSHGVKQN NPA*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G197600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150420.0AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533026.10.0transcription factor bHLH87
RefseqXP_028244468.10.0transcription factor bHLH87-like
SwissprotQ8S3D22e-85BH087_ARATH; Transcription factor bHLH87
TrEMBLA0A445JHB40.0A0A445JHB4_GLYSO; Transcription factor bHLH87 isoform A
TrEMBLK7L7Q60.0K7L7Q6_SOYBN; Uncharacterized protein
STRINGGLYMA08G21130.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45303257
Representative plantOGRP10281610
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21330.17e-81bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]