PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G195300.1.p
Common NameGLYMA_08G195300, LOC778103
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family Dof
Protein Properties Length: 214aa    MW: 22875.2 Da    PI: 8.8889
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G195300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.31.9e-391878262
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                         ++++l+cprC+s+ntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGgg+rk  k+s
  Glyma.08G195300.1.p 18 EQEQLQCPRCNSNNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGGSRKTTKRS 78
                         57899***************************************************98876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-261470IPR003851Zinc finger, Dof-type
PfamPF027015.7E-332076IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.2552276IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102460IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MQHPTIFPGV KPPPHFPEQE QLQCPRCNSN NTKFCYYNNY NLSQPRHFCK NCRRYWTKGG  60
ALRNIPVGGG SRKTTKRSSS TSKRSSAPSS SSSAVSDPDP TRNCTNPVDQ DQRVLNIGGG  120
SFSSLLASSG HFGTLLEGLN PTGSSLKMGE FGEGVSSDPG LNLVSGQNPG LQVQSTNGRS  180
ESFLGLQNGD SSCWNGTHGW SDLAIYTPGP SFQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.286770.0meristem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G195300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359040.0AC235904.2 Glycine max clone GM_WBc0179J02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585530.11e-155dof zinc finger protein DOF3.1
SwissprotO821556e-41DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLI1KUW81e-154I1KUW8_SOYBN; Uncharacterized protein
STRINGGLYMA08G20840.11e-155(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61813351
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.11e-35DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]