PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G192300.1.p
Common NameGLYMA_08G192300, LOC100808344
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 531aa    MW: 58109.9 Da    PI: 8.9077
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G192300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-0588110123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C++C+k F r  nL+ H r H
  Glyma.08G192300.1.p  88 FICEICNKGFQRDQNLQLHRRGH 110
                          89*******************88 PP
2zf-C2H2120.00063164186123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC +C+k +  +s+ k H +t+
  Glyma.08G192300.1.p 164 WKCDKCSKKYAVQSDWKAHSKTC 186
                          58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.07E-687110No hitNo description
Gene3DG3DSA:3.30.160.601.4E-587110IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.02288110IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.84588110IPR007087Zinc finger, C2H2
PfamPF121716.4E-588110IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS00028090110IPR007087Zinc finger, C2H2
SMARTSM00355210129159IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.6E-4152185IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.07E-6159184No hitNo description
SMARTSM00355150164184IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 531 aa     Download sequence    Send to blast
MEMKGFMFHH QQQQQVVVEE NMSNLTSASG EASAASSGNR TEIGTSYMAP PPSQTQQSKK  60
KRNLPGNPDP DAEVIALSPK SLLATNRFIC EICNKGFQRD QNLQLHRRGH NLPWKLKQRT  120
SKEVRKKVYV CPEPSCVHHD PSRALGDLTG IKKHFCRKHG EKKWKCDKCS KKYAVQSDWK  180
AHSKTCGTRE YRCDCGTLFS RRDSFITHRA FCDALAEESA RAITNPLLPP QQQQQQPSSS  240
SHHQMSTLQT QFNPQNNLHA FPLKKEQQSF NVRTEMPPWL GPPAATVVVD HHHHHLSSSS  300
SSIMFSPPHQ ENPNPNPSLG PTLAAYKTVA NPPHMSATAL LQKAAQMGAT MSRSGSSPAM  360
TGPHHHAHVS YSADSASAHF GLNLSSREDT TTSTTTTTTT KTATVFSHGL LSSPLGNKAG  420
AAVSSSAPSL LHDVINSFSV SPSAFEGTPF EDAFIQSSKK LDDDDHHNLY LHDTFSKTSS  480
STGAAGNINE GLTRDFLGLR PLSHTDILTI AGIGNCIHDH QNQSQKPWQG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-35160221364Zinc finger protein JACKDAW
5b3h_F1e-35160221364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114126KLKQRTSKEVRKK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.613000.0cotyledon| hypocotyl
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G192300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-174AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003533006.20.0protein indeterminate-domain 7
SwissprotQ8H1F51e-125IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLK7L7L40.0K7L7L4_SOYBN; Uncharacterized protein
STRINGGLYMA08G20520.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-105indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]