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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G189900.2.p | ||||||||
Common Name | GLYMA_08G189900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 253aa MW: 27352.8 Da PI: 8.397 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 42.3 | 1.7e-13 | 5 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47 +++WT++E++ l+ +v+++G+g Wk I + + + R+ ++k++w+++ Glyma.08G189900.2.p 5 KQKWTQDEEDALIAGVEKHGPGKWKNILKDPQfapflTSRSNIDLKDKWRNL 56 79************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.532 | 1 | 62 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.07E-16 | 2 | 58 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 3.8E-15 | 4 | 56 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.1E-8 | 4 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-10 | 5 | 56 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 1.13E-21 | 6 | 56 | No hit | No description |
Gene3D | G3DSA:1.10.10.10 | 7.8E-7 | 113 | 154 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 1.96E-6 | 114 | 151 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PROSITE profile | PS51504 | 12.268 | 115 | 214 | IPR005818 | Linker histone H1/H5, domain H15 |
Pfam | PF00538 | 1.2E-5 | 117 | 154 | IPR005818 | Linker histone H1/H5, domain H15 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006334 | Biological Process | nucleosome assembly | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MGNQKQKWTQ DEEDALIAGV EKHGPGKWKN ILKDPQFAPF LTSRSNIDLK DKWRNLSVSN 60 GAQGSKEKSR VPKLKALPAP PAPTATPQNA APALQNAASD VTPPDASQND QDAKNPPRYN 120 AMIFEALSAL KDSNGSDMNA IIKFMEVQNG YKVKKEASSG TKSPSPKPKD VRPPQPQQQS 180 PASVLMTNDT IKEAADTAAY RVADAESKSY LAAEAVKEAE KISLLVEHSD SMLQLAKDIY 240 EQCSRGEIIL LA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.9522 | 0.0 | cotyledon| flower| hypocotyl| meristem| pod| root| stem |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00231 | DAP | Transfer from AT1G72740 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G189900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT099371 | 0.0 | BT099371.1 Soybean clone JCVI-FLGm-23H24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006584644.1 | 0.0 | MYB transcription factor MYB107 isoform X1 | ||||
Refseq | XP_028244363.1 | 0.0 | telomere repeat-binding factor 4-like isoform X2 | ||||
TrEMBL | A0A445JGS7 | 0.0 | A0A445JGS7_GLYSO; Telomere repeat-binding factor 5 isoform B | ||||
TrEMBL | I1KUQ8 | 0.0 | I1KUQ8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G20270.1 | 1e-156 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72740.2 | 2e-46 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G189900.2.p |
Entrez Gene | 778177 |