PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G189900.1.p
Common NameGLYMA_08G189900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 282aa    MW: 30788.9 Da    PI: 9.9744
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G189900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.12.1e-13556147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                         +++WT++E++ l+ +v+++G+g Wk I +  +     + R+  ++k++w+++
  Glyma.08G189900.1.p  5 KQKWTQDEEDALIAGVEKHGPGKWKNILKDPQfapflTSRSNIDLKDKWRNL 56
                         79************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.532162IPR017930Myb domain
SuperFamilySSF466895.52E-16258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.6E-15456IPR009057Homeodomain-like
SMARTSM007171.1E-8459IPR001005SANT/Myb domain
PfamPF002494.7E-10556IPR001005SANT/Myb domain
CDDcd116603.76E-21656No hitNo description
SMARTSM005264.5E-17113179IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.104.1E-15113187IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.99E-16114196IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150423.978115184IPR005818Linker histone H1/H5, domain H15
PfamPF005385.6E-12117179IPR005818Linker histone H1/H5, domain H15
CDDcd000731.41E-11117196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MGNQKQKWTQ DEEDALIAGV EKHGPGKWKN ILKDPQFAPF LTSRSNIDLK DKWRNLSVSN  60
GAQGSKEKSR VPKLKALPAP PAPTATPQNA APALQNAASD VTPPDASQND QDAKNPPRYN  120
AMIFEALSAL KDSNGSDMNA IIKFMEQKNL QVNQNFRRAL STKLRRLVSQ GKLEKVQNGY  180
KVKKEASSGT KSPSPKPKDV RPPQPQQQSP ASVLMTNDTI KEAADTAAYR VADAESKSYL  240
AAEAVKEAEK ISLLVEHSDS MLQLAKDIYE QCSRGEIILL A*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.95220.0cotyledon| flower| hypocotyl| meristem| pod| root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G189900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0993710.0BT099371.1 Soybean clone JCVI-FLGm-23H24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028244362.10.0telomere repeat-binding factor 4-like isoform X1
TrEMBLA0A445JGS90.0A0A445JGS9_GLYSO; Telomere repeat-binding factor 5 isoform A
TrEMBLI1KUQ70.0I1KUQ7_SOYBN; Uncharacterized protein
STRINGGLYMA08G20270.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.21e-63MYB_related family protein