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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.08G189000.1.p | ||||||||
Common Name | GLYMA_08G189000, LOC102668663 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ZF-HD | ||||||||
Protein Properties | Length: 147aa MW: 17172.8 Da PI: 9.865 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 62.7 | 7.7e-20 | 15 | 63 | 3 | 57 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57 v+YkeC +NhAa+ G +DGC E++ + ++ l Ca CgCHRnFHR+++ Glyma.08G189000.1.p 15 VVTYKECWHNHAAARGRVIYDGCLEYLVD------QDNLICACCGCHRNFHRKHT 63 689************************98......578***************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.1E-16 | 16 | 63 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.8E-15 | 17 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 15.68 | 18 | 62 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 8.0E-9 | 18 | 61 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 1.2E-13 | 75 | 142 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.1E-18 | 77 | 144 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 9.734 | 81 | 145 | IPR001356 | Homeobox domain |
TIGRFAMs | TIGR01565 | 1.2E-17 | 83 | 139 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MSDINPNQPL PMDEVVTYKE CWHNHAAARG RVIYDGCLEY LVDQDNLICA CCGCHRNFHR 60 KHTIFNGIPE TQTLDRVQGM RPKRKKRTTF SSEQRNKLIC FAESVGWKPR KDKKNEIQSF 120 CSEMGMTRRM FLIWLSNNRH RAIKKA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.08G189000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006586401.1 | 1e-109 | zinc-finger homeodomain protein 6 | ||||
TrEMBL | K7L7J3 | 1e-107 | K7L7J3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA08G20170.2 | 1e-108 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15282 | 5 | 11 |
Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 1e-24 | homeobox protein 24 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.08G189000.1.p |
Entrez Gene | 102668663 |