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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.08G181100.1.p |
Common Name | GLYMA_08G181100, LOC100793989 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
NAC |
Protein Properties |
Length: 191aa MW: 21917.4 Da PI: 4.9335 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.08G181100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 118.7 | 5.6e-37 | 8 | 128 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrF Ptdeelvv++L++k++ +++ ++i+++++y ++Pw+L+ ++ ae ++wy++s+r +nr+t +gyWk tg ++
Glyma.08G181100.1.p 8 LPPGFRFYPTDEELVVHFLHRKASLLPCHP-DAIPDLEVYPYDPWELDGRALAEGNQWYYYSRRT--------QNRVTGNGYWKPTGMEE 88
79*************************999.89**************977778899******984........58*************** PP
NAM 91 evlsk.kgelvglkktLvfykgrapk.gektdWvmheyrl 128
+v+s+ +++ vg+kk +vf+ g+ap+ g kt+W+m+eyrl
Glyma.08G181100.1.p 89 PVVSStSNKRVGMKKYFVFHVGEAPTaGIKTNWIMQEYRL 128
***9867778**********998875378*********98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 191 aa
Download sequence Send
to blast |
MGDNNVNLPP GFRFYPTDEE LVVHFLHRKA SLLPCHPDAI PDLEVYPYDP WELDGRALAE 60 GNQWYYYSRR TQNRVTGNGY WKPTGMEEPV VSSTSNKRVG MKKYFVFHVG EAPTAGIKTN 120 WIMQEYRLSD SASSTRSSKR KPQPKIEYNK WVICRVYERN GDDDNGTELS CLDEVFLSLD 180 DDLDEISLPN *
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
3swm_A | 1e-40 | 4 | 160 | 16 | 169 | NAC domain-containing protein 19 |
3swm_B | 1e-40 | 4 | 160 | 16 | 169 | NAC domain-containing protein 19 |
3swm_C | 1e-40 | 4 | 160 | 16 | 169 | NAC domain-containing protein 19 |
3swm_D | 1e-40 | 4 | 160 | 16 | 169 | NAC domain-containing protein 19 |
3swp_A | 1e-40 | 4 | 160 | 16 | 169 | NAC domain-containing protein 19 |
3swp_B | 1e-40 | 4 | 160 | 16 | 169 | NAC domain-containing protein 19 |
3swp_C | 1e-40 | 4 | 160 | 16 | 169 | NAC domain-containing protein 19 |
3swp_D | 1e-40 | 4 | 160 | 16 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU661918 | 0.0 | EU661918.1 Glycine max NAC domain protein (NAC18) mRNA, partial cds. |