PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G178900.2.p
Common NameGLYMA_08G178900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family CAMTA
Protein Properties Length: 1038aa    MW: 117104 Da    PI: 5.7237
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G178900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11703.6e-53151344118
                 CG-1   4 ekkrwlkneeiaaiLenfekheltlelktrpks.....gsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahs 88 
                           ++rwl++ ei++iL n++ +++t+e+++rp+s     gsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLK+g+v+vl+cyYah+
  Glyma.08G178900.2.p  15 AQHRWLRPAEICEILRNYRMFHITSEPHNRPPSmvtacGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKIGSVDVLHCYYAHG 104
                          49****************************975445559*************************************************** PP

                 CG-1  89 eenptfqrrcywlLeeelekivlvhylevk 118
                          een++fqrr+yw+Le ++ +iv+vhylevk
  Glyma.08G178900.2.p 105 EENENFQRRSYWMLEPDMMHIVFVHYLEVK 134
                          ***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143776.3278139IPR005559CG-1 DNA-binding domain
SMARTSM010762.1E-7611134IPR005559CG-1 DNA-binding domain
PfamPF038594.6E-4714133IPR005559CG-1 DNA-binding domain
SuperFamilySSF812968.87E-15459544IPR014756Immunoglobulin E-set
PfamPF018334.3E-5459534IPR002909IPT domain
PROSITE profilePS5029720.102641752IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.5E-20642753IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484034.51E-21646752IPR020683Ankyrin repeat-containing domain
CDDcd002042.44E-16647750No hitNo description
SMARTSM002481100658687IPR002110Ankyrin repeat
PROSITE profilePS500889.084658690IPR002110Ankyrin repeat
PfamPF127961.3E-7663753IPR020683Ankyrin repeat-containing domain
SMARTSM002483.5E-4691720IPR002110Ankyrin repeat
PROSITE profilePS5008810.606691723IPR002110Ankyrin repeat
SMARTSM002481900730759IPR002110Ankyrin repeat
PROSITE profilePS500968.242865894IPR000048IQ motif, EF-hand binding site
PfamPF006120.011867885IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1038 aa     Download sequence    Send to blast
MWVFFSYIQQ LQFEAQHRWL RPAEICEILR NYRMFHITSE PHNRPPSMVT ACGSLFLFDR  60
KVLRYFRKDG HNWRKKKDGK TVKEAHEKLK IGSVDVLHCY YAHGEENENF QRRSYWMLEP  120
DMMHIVFVHY LEVKGNKNIV VNTEGDEIPS DSQKVTSSSS SLPTHHSSVP SLSTDSVSPT  180
TSLMSLREDA DSGDYEQSSI SGTDYIPVVH GDKFRGNDTA YIDGQKTHDV ATWSTVLQST  240
AKLHNDPSLA SSPSIPSSSM GDVLEQEHTI FSDLLMSKSG LTEVAESSQS LQSNWQIPFE  300
DNSGGMPMLT QTQTFGLQFR SDYGTGLLGN ETRNACSESA AILYSFNGEP KEQPMQQNYL  360
QELEDGQSQH ALKSNSANKV PDEETINYGL TVKRTLLDKD ESLKKVDSFS RWITKELGEV  420
ADLNMQSSPG ISWSTDECQH VIDDTSLSPS LSQDQLFSIN DFSPKWAYAE SEIEVLIIGS  480
FLKSQPEVTT CNWSCMFGEV EIPAKVLADG ILCCQAPRHK VGRVPFYVTC SNRLACSEVR  540
EFDFREGFAR NVDFADFYNS SEILLHLRLE DFLSLKPVDP SNHSFEGDME KRNLIFQLIS  600
LREVEEYSIK DEVTTELDIS QHMVKEHLFH KQFKEKLYSW LLHKVTESGK GPNVLDEDGQ  660
GVLHLAAFLG YDWAINPIIS AGVNINFRDV NGWTALHWAA SCGRERTVAV LVSMGADCGA  720
LTDPSPSSPA GRTAADLASS YGHKGISGFL AESSLTHHLE TLTMDDQKGG RQEISGMKAV  780
QTVSERSATP VHFGDMPDLC LKDSLTAVRN ATQAADRIHQ VYRMQSFQRK QLTQYESDEL  840
GLSDQQALSL LASRACKSGQ GDGLANAAAV QIQKKFRGWK KRQEFLMIRQ RVAHVRGHQV  900
RKQYKPIIWS VGILEKIILR WRRKGSGLRG FRPNVINEVP DQQNNSLKED DYDYLKEGRK  960
QKEEKIQKAL SRVKSMAQYP EARAQYRRLL NVVEDFRQTK ASNEGLINSE ETVDGMEDLI  1020
DIDMLLDDDN FIPIAFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hry_A2e-1164775258157ank3C2_1
5hry_B2e-1164775258157ank3C2_1
5hry_C2e-1164775258157ank3C2_1
5hry_D2e-1164775258157ank3C2_1
5hry_E2e-1164775258157ank3C2_1
5hry_F2e-1164775258157ank3C2_1
5hry_G2e-1164775258157ank3C2_1
5hry_H2e-1164775258157ank3C2_1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.218210.0cotyledon| hypocotyl| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, old leaves, petals, sepals, top of carpels, stigmas, stamen filaments, anthers and siliques, but not in pollen. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in freezing tolerance in association with CAMTA1 and CAMTA3. Contributes together with CAMTA1 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved together with CAMTA3 and CAMTA4 in the positive regulation of a general stress response (PubMed:25039701). Involved in tolerance to aluminum. Binds to the promoter of ALMT1 transporter and contributes to the positive regulation of aluminum-induced expression of ALMT1 (PubMed:25627216). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:23581962, ECO:0000269|PubMed:25039701, ECO:0000269|PubMed:25627216, ECO:0000305|PubMed:11925432}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G178900.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, wounding, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:25627216}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025985438.10.0calmodulin-binding transcription activator 2
SwissprotQ6NPP40.0CMTA2_ARATH; Calmodulin-binding transcription activator 2
TrEMBLA0A0R0IV390.0A0A0R0IV39_SOYBN; Uncharacterized protein
STRINGGLYMA15G05900.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.20.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]