PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G172600.1.p
Common NameGLYMA_08G172600, LOC100813525
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family FAR1
Protein Properties Length: 689aa    MW: 79380.4 Da    PI: 7.8336
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G172600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1431.5e-1365150191
                 FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                          ++Y ++A++ GF+v +++sk +++ ++  +   vCs+  ++++++       ++  +t+t+Cka+++  +  dgk +v ++ l+HnHel+
  Glyma.08G172600.1.p  65 NYYTNFAQHKGFEVYRRTSKMEEDGKKYFTLACVCSRRSENKRSHLL-----NPYLVTKTQCKARINACLCLDGKIRVLSVALDHNHELC 149
                          69*******************99999999999999998888887766.....9************************************9 PP

                 FAR1  91 p 91 
                          p
  Glyma.08G172600.1.p 150 P 150
                          7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.8E-1165150IPR004330FAR1 DNA binding domain
PfamPF105514.1E-33270364IPR018289MULE transposase domain
PROSITE profilePS5096610.188554592IPR007527Zinc finger, SWIM-type
PfamPF044343.3E-5564588IPR007527Zinc finger, SWIM-type
SMARTSM005750.0011567594IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 689 aa     Download sequence    Send to blast
MEGESVSSSS KSQNDVIEKM SLNEGMEDGN GEAPEHGLQK LVQFNEEVEE PKVGMTFPSE  60
QEIFNYYTNF AQHKGFEVYR RTSKMEEDGK KYFTLACVCS RRSENKRSHL LNPYLVTKTQ  120
CKARINACLC LDGKIRVLSV ALDHNHELCP GKARLIKYTK KSKPQRKRKH DLSNLAGING  180
DGSIQSPGVE AGEHGSLGFF DKNRRIFIQK ASSLRFESGD AEAIQSYFVR MQKINSSFYY  240
VMDLDDDCRL RNVFWADARS KAANEYFGDV VTFDTTYLTN KYNIPLALFL GVNHHGQSVL  300
LGIALLSNED AETFTWLFQT WLACMSTGHA PIAIITREDR AIKTAIEIVF PKARQRWCLS  360
HIMKRVSEKL RGYPRYESIK TDFDGAVYDS FSKDDFNESW KKLIYSHNLH DNEWLNSLYN  420
ERHRWVPVYV KDTFWAGMST IDRNESVHAF FDGYVCSKTS LKQFFKQFDN AMKDKVEKEC  480
LADFNSFNNL IPCRSHFGIE YQFQKVYTNG KFKEFQEEVA CIMYCNAAFE KKEGLVSAYS  540
VVESKKIQEA IKYVTFNVQF NEEDFEVQCE CHLFEFKGIL CRHILSLLKL IRKTESVPSK  600
YVFSHWRKDL KRKHTLVRSS YGDLIANPEA ERLDKMCNAF QEVACMGVNT DVDFKKVMKW  660
IDDLKVELSC KKTSTGITET LPIASNMS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G172600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003532941.20.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_006585429.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_014634530.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_014634531.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_014634532.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_028244133.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_028244134.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_028244135.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_028244136.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_028244137.10.0protein FAR1-RELATED SEQUENCE 6-like
RefseqXP_028244139.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A445JFW40.0A0A445JFW4_GLYSO; Protein FAR1-RELATED SEQUENCE 6 isoform A
TrEMBLK7L7930.0K7L793_SOYBN; Uncharacterized protein
STRINGGLYMA08G18380.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-111FAR1-related sequence 6