PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.08G156500.2.p
Common NameGLYMA_08G156500, LOC100778933
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 317aa    MW: 35000.3 Da    PI: 4.6259
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.08G156500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1431.7e-4451303128
                  NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          +G+rFhPt  elvv++Lk+kv gkk+    +i+e+diyk+ PwdLp k +++++e ewyfF++ +kky +g++ +rat+ gyWkatgkd+
  Glyma.08G156500.2.p   5 VGVRFHPTGVELVVYFLKRKVMGKKICD-GFIAELDIYKYAPWDLPdKsCLRTGELEWYFFCPLEKKYGSGSKMKRATEIGYWKATGKDR 93 
                          7************************877.89**************96447778888********************************** PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           v + ++++vg+ ktL+f++g++p+ge+tdWvmhe rl
  Glyma.08G156500.2.p  94 VVQH-NNRTVGMIKTLIFHTGKSPRGERTDWVMHEHRL 130
                          9999.999***************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100549.7543153IPR003441NAC domain
SuperFamilySSF1019413.27E-544153IPR003441NAC domain
PfamPF023651.3E-215130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVKTVGVRFH PTGVELVVYF LKRKVMGKKI CDGFIAELDI YKYAPWDLPD KSCLRTGELE  60
WYFFCPLEKK YGSGSKMKRA TEIGYWKATG KDRVVQHNNR TVGMIKTLIF HTGKSPRGER  120
TDWVMHEHRL EDKDLADKGI AQDSYVVCKV FQKEGLGPGK GTHYARPFNE EEWDDEEIGI  180
PCAALTAQVP TLPITSDGSV ANDNHLPASG CIGSASTSCL SGSVPSLGTV NPTGPNDQAV  240
NDDILPMLHI FNDDKWFEEN IVEGAPPSDD FFAGLEDYFA GFSSGQNTGD VGNSDDLDFL  300
ELNDLDTPLF YPTTQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-41615418169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.178220.0cotyledon| flower| leaf| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.08G156500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-84AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006585360.10.0NAC domain-containing protein 82 isoform X2
RefseqXP_028243982.10.0NAC domain-containing protein 82-like isoform X2
TrEMBLA0A445JF540.0A0A445JF54_GLYSO; NAC domain-containing protein 82 isoform C
TrEMBLI1KTP30.0I1KTP3_SOYBN; Uncharacterized protein
STRINGGLYMA08G16630.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.13e-83NAC domain containing protein 103